Literature DB >> 27128410

pK(a) of a Proton-Conducting Water Chain in Photosystem II.

Tomohiro Takaoka1, Naoki Sakashita1, Keisuke Saito1,2,3, Hiroshi Ishikita1,2.   

Abstract

Recent high-resolution crystal structures of the water-oxidizing enzyme photosystem II (PSII) show that O4 of the catalytic Mn4CaO5 cluster forms an H-bond with a water molecule W539, which belongs to a chain of water molecules (O4-water chain). Oxidation of Mn4CaO5 to S1 resulted in elongation of the O-H bonds and decrease in pKa(O-H/O(-)) in the [O4-H···OW539-H···OW538-H···OW393] region along the O4-water chain. In S1, removal of all water molecules from the O4-water chain, except W539, resulted in a significant pKa upshift at O4; this suggests that the proton-conducting water chain serves as a conducting media for protons and significantly decreases the donor pKa, leading to a downhill proton transfer. The absence of a corresponding proton-conducting channel is disadvantageous for release of protons from the proton-releasing site, as in the case of O5 that has no H-bond partner.

Entities:  

Year:  2016        PMID: 27128410     DOI: 10.1021/acs.jpclett.6b00656

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  11 in total

1.  The photosynthetic cytochrome c 550 from the diatom Phaeodactylum tricornutum.

Authors:  Pilar Bernal-Bayard; Leonor Puerto-Galán; Inmaculada Yruela; Inés García-Rubio; Carmen Castell; José M Ortega; Pablo J Alonso; Mercedes Roncel; Jesús I Martínez; Manuel Hervás; José A Navarro
Journal:  Photosynth Res       Date:  2016-12-28       Impact factor: 3.573

2.  Structurally conserved channels in cyanobacterial and plant photosystem II.

Authors:  Naoki Sakashita; Hiroshi C Watanabe; Takuya Ikeda; Hiroshi Ishikita
Journal:  Photosynth Res       Date:  2017-02-10       Impact factor: 3.573

3.  Conformational Changes and H-Bond Rearrangements during Quinone Release in Photosystem II.

Authors:  Yu Sugo; Keisuke Saito; Hiroshi Ishikita
Journal:  Biochemistry       Date:  2022-08-01       Impact factor: 3.321

Review 4.  Binding and functions of the two chloride ions in the oxygen-evolving center of photosystem II.

Authors:  Ko Imaizumi; Kentaro Ifuku
Journal:  Photosynth Res       Date:  2022-06-13       Impact factor: 3.429

5.  Glycerol binding at the narrow channel of photosystem II stabilizes the low-spin S2 state of the oxygen-evolving complex.

Authors:  David A Flesher; Jinchan Liu; Jessica M Wiwczar; Krystle Reiss; Ke R Yang; Jimin Wang; Mikhail Askerka; Christopher J Gisriel; Victor S Batista; Gary W Brudvig
Journal:  Photosynth Res       Date:  2022-03-23       Impact factor: 3.429

6.  Redox potentials of ubiquinone, menaquinone, phylloquinone, and plastoquinone in aqueous solution.

Authors:  Shinnosuke Kishi; Keisuke Saito; Yuki Kato; Hiroshi Ishikita
Journal:  Photosynth Res       Date:  2017-08-22       Impact factor: 3.573

7.  The Existence of an Isolated Hydronium Ion in the Interior of Proteins.

Authors:  Takuya Ikeda; Keisuke Saito; Ryo Hasegawa; Hiroshi Ishikita
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-30       Impact factor: 15.336

8.  Interaction of methanol with the oxygen-evolving complex: atomistic models, channel identification, species dependence, and mechanistic implications.

Authors:  Marius Retegan; Dimitrios A Pantazis
Journal:  Chem Sci       Date:  2016-07-05       Impact factor: 9.825

9.  Prediction of Passive Membrane Permeability by Semi-Empirical Method Considering Viscous and Inertial Resistances and Different Rates of Conformational Change and Diffusion.

Authors:  Yoshifumi Fukunishi; Tadaaki Mashimo; Takashi Kurosawa; Yoshinori Wakabayashi; Hironori K Nakamura; Koh Takeuchi
Journal:  Mol Inform       Date:  2019-10-14       Impact factor: 3.353

10.  Mechanism of the formation of proton transfer pathways in photosynthetic reaction centers.

Authors:  Yu Sugo; Keisuke Saito; Hiroshi Ishikita
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

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