Literature DB >> 27126233

A Clinician's perspective on clinical exome sequencing.

Anne H O'Donnell-Luria1,2,3, David T Miller4,5,6.   

Abstract

Clinical exome sequencing has clearly improved our ability as clinicians to identify the cause of a wide variety of disorders. Prior to exome sequencing, a majority of patients with apparent syndromes never received a specific molecular genetic diagnosis despite extensive diagnostic odysseys. Even for those receiving an answer to the question of what caused their disorder, the diagnostic odyssey often spanned years to decades. Determining the particular genetic cause in an individual patient can be challenging due to inherent phenotypic and genetic heterogeneity of disease, technical limitations of testing or both. Blended phenotypes, due to multiple monogenic disorders in the same patient, are true dilemmas for traditional genetic evaluations, but are increasingly being diagnosed through clinical exome sequencing. New sequencing technologies have increased the proportion of patients receiving molecular diagnoses, while significantly shortening the time scale, providing multiple benefits for the health-care team, patient and family.

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Year:  2016        PMID: 27126233     DOI: 10.1007/s00439-016-1662-x

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  52 in total

1.  PhenomeCentral: a portal for phenotypic and genotypic matchmaking of patients with rare genetic diseases.

Authors:  Orion J Buske; Marta Girdea; Sergiu Dumitriu; Bailey Gallinger; Taila Hartley; Heather Trang; Andriy Misyura; Tal Friedman; Chandree Beaulieu; William P Bone; Amanda E Links; Nicole L Washington; Melissa A Haendel; Peter N Robinson; Cornelius F Boerkoel; David Adams; William A Gahl; Kym M Boycott; Michael Brudno
Journal:  Hum Mutat       Date:  2015-08-31       Impact factor: 4.878

2.  The Matchmaker Exchange: a platform for rare disease gene discovery.

Authors:  Anthony A Philippakis; Danielle R Azzariti; Sergi Beltran; Anthony J Brookes; Catherine A Brownstein; Michael Brudno; Han G Brunner; Orion J Buske; Knox Carey; Cassie Doll; Sergiu Dumitriu; Stephanie O M Dyke; Johan T den Dunnen; Helen V Firth; Richard A Gibbs; Marta Girdea; Michael Gonzalez; Melissa A Haendel; Ada Hamosh; Ingrid A Holm; Lijia Huang; Matthew E Hurles; Ben Hutton; Joel B Krier; Andriy Misyura; Christopher J Mungall; Justin Paschall; Benedict Paten; Peter N Robinson; François Schiettecatte; Nara L Sobreira; Ganesh J Swaminathan; Peter E Taschner; Sharon F Terry; Nicole L Washington; Stephan Züchner; Kym M Boycott; Heidi L Rehm
Journal:  Hum Mutat       Date:  2015-10       Impact factor: 4.878

3.  Effectiveness of exome and genome sequencing guided by acuity of illness for diagnosis of neurodevelopmental disorders.

Authors:  Sarah E Soden; Carol J Saunders; Laurel K Willig; Emily G Farrow; Laurie D Smith; Josh E Petrikin; Jean-Baptiste LePichon; Neil A Miller; Isabelle Thiffault; Darrell L Dinwiddie; Greyson Twist; Aaron Noll; Bryce A Heese; Lee Zellmer; Andrea M Atherton; Ahmed T Abdelmoity; Nicole Safina; Sarah S Nyp; Britton Zuccarelli; Ingrid A Larson; Ann Modrcin; Suzanne Herd; Mitchell Creed; Zhaohui Ye; Xuan Yuan; Robert A Brodsky; Stephen F Kingsmore
Journal:  Sci Transl Med       Date:  2014-12-03       Impact factor: 17.956

4.  LOVD v.2.0: the next generation in gene variant databases.

Authors:  Ivo F A C Fokkema; Peter E M Taschner; Gerard C P Schaafsma; J Celli; Jeroen F J Laros; Johan T den Dunnen
Journal:  Hum Mutat       Date:  2011-02-22       Impact factor: 4.878

5.  The burden of genetic disease on inpatient care in a children's hospital.

Authors:  Shawn E McCandless; Jeanne W Brunger; Suzanne B Cassidy
Journal:  Am J Hum Genet       Date:  2003-12-12       Impact factor: 11.025

6.  A Case of HDR Syndrome and Ichthyosis: Dual Diagnosis by Whole-Genome Sequencing of Novel Mutations in GATA3 and STS Genes.

Authors:  Gregory Goodwin; Pamela P Hawley; David T Miller
Journal:  J Clin Endocrinol Metab       Date:  2016-01-05       Impact factor: 5.958

7.  Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions.

Authors:  Kelly D Farwell; Layla Shahmirzadi; Dima El-Khechen; Zöe Powis; Elizabeth C Chao; Brigette Tippin Davis; Ruth M Baxter; Wenqi Zeng; Cameron Mroske; Melissa C Parra; Stephanie K Gandomi; Ira Lu; Xiang Li; Hong Lu; Hsiao-Mei Lu; David Salvador; David Ruble; Monica Lao; Soren Fischbach; Jennifer Wen; Shela Lee; Aaron Elliott; Charles L M Dunlop; Sha Tang
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

8.  OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders.

Authors:  Joanna S Amberger; Carol A Bocchini; François Schiettecatte; Alan F Scott; Ada Hamosh
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 19.160

9.  Whole-exome sequencing in undiagnosed genetic diseases: interpreting 119 trios.

Authors:  Xiaolin Zhu; Slavé Petrovski; Pingxing Xie; Elizabeth K Ruzzo; Yi-Fan Lu; K Melodi McSweeney; Bruria Ben-Zeev; Andreea Nissenkorn; Yair Anikster; Danit Oz-Levi; Ryan S Dhindsa; Yuki Hitomi; Kelly Schoch; Rebecca C Spillmann; Gali Heimer; Dina Marek-Yagel; Michal Tzadok; Yujun Han; Gordon Worley; Jennifer Goldstein; Yong-Hui Jiang; Doron Lancet; Elon Pras; Vandana Shashi; Duncan McHale; Anna C Need; David B Goldstein
Journal:  Genet Med       Date:  2015-01-15       Impact factor: 8.822

10.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

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  9 in total

Review 1.  The Impact of Next-Generation Sequencing on the Diagnosis and Treatment of Epilepsy in Paediatric Patients.

Authors:  Davide Mei; Elena Parrini; Carla Marini; Renzo Guerrini
Journal:  Mol Diagn Ther       Date:  2017-08       Impact factor: 4.074

2.  Will New Genetic Techniques Like Exome Sequencing and Others Obviate the Need for Clinical Expertise? Yes.

Authors:  Vincenzo Bonifati
Journal:  Mov Disord Clin Pract       Date:  2016-10-17

Review 3.  Diagnostic Tools for Inborn Errors of Human Immunity (Primary Immunodeficiencies and Immune Dysregulatory Diseases).

Authors:  Annely M Richardson; Ann M Moyer; Linda Hasadsri; Roshini S Abraham
Journal:  Curr Allergy Asthma Rep       Date:  2018-02-22       Impact factor: 4.806

Review 4.  Integrating next-generation sequencing into clinical oncology: strategies, promises and pitfalls.

Authors:  Peter Horak; Stefan Fröhling; Hanno Glimm
Journal:  ESMO Open       Date:  2016-11-18

5.  Application of Whole Exome and Targeted Panel Sequencing in the Clinical Molecular Diagnosis of 319 Chinese Families with Inherited Retinal Dystrophy and Comparison Study.

Authors:  Likun Wang; Jinlu Zhang; Ningning Chen; Lei Wang; Fengsheng Zhang; Zhizhong Ma; Genlin Li; Liping Yang
Journal:  Genes (Basel)       Date:  2018-07-19       Impact factor: 4.096

6.  Meta-analysis and multidisciplinary consensus statement: exome sequencing is a first-tier clinical diagnostic test for individuals with neurodevelopmental disorders.

Authors:  Siddharth Srivastava; Jamie A Love-Nichols; Kira A Dies; David H Ledbetter; Christa L Martin; Wendy K Chung; Helen V Firth; Thomas Frazier; Robin L Hansen; Lisa Prock; Han Brunner; Ny Hoang; Stephen W Scherer; Mustafa Sahin; David T Miller
Journal:  Genet Med       Date:  2019-06-11       Impact factor: 8.822

Review 7.  "Transcriptomics": molecular diagnosis of inborn errors of metabolism via RNA-sequencing.

Authors:  Laura S Kremer; Saskia B Wortmann; Holger Prokisch
Journal:  J Inherit Metab Dis       Date:  2018-01-25       Impact factor: 4.982

8.  Application of targeted panel sequencing and whole exome sequencing for 76 Chinese families with retinitis pigmentosa.

Authors:  Handong Dan; Xin Huang; Yiqiao Xing; Yin Shen
Journal:  Mol Genet Genomic Med       Date:  2020-01-20       Impact factor: 2.183

9.  Trio exome sequencing is highly relevant in prenatal diagnostics.

Authors:  Heinz Gabriel; Dirk Korinth; Martin Ritthaler; Björn Schulte; Florian Battke; Constantin von Kaisenberg; Max Wüstemann; Bernt Schulze; Almuth Friedrich-Freksa; Lutz Pfeiffer; Michael Entezami; Andreas Schröer; Joachim Bürger; Eva Maria Christina Schwaibold; Holger Lebek; Saskia Biskup
Journal:  Prenat Diagn       Date:  2021-12-27       Impact factor: 3.242

  9 in total

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