Literature DB >> 27122724

Next-Generation Sequencing in the Genetics of Human Atrial Fibrillation.

Chia-Shan Hsieh1, Eric Y Chuang1, Jyh-Ming Jimmy Juang2, Juey-Jen Hwang2, Chuen-Den Tseng2, Fu-Tien Chiang2, Ling-Ping Lai2, Jiunn-Lee Lin2, Chia-Ti Tsai2.   

Abstract

UNLABELLED: The International Human Genome Sequencing Consortium published the first draft of the human genome in the journal Nature in February 2001, providing the sequence of the entire genome's three billion base pairs. The Human Genome Project involves a concerted effort to better understand the human DNA sequence through identification of all the genes. The knowledge that can be derived from the genome could result in the development of novel diagnostic assays, targeted therapies and the improved ability to predict the onset, severity and progression of diseases. This has been made possible by many parallelized, high-throughput technologies such as next-generation sequencing. In this review, we discuss the possible application of next-generation sequencing in finding the susceptibility gene(s) or disease mechanism of an important human arrhythmia called atrial fibrillation. KEY WORDS: Arrhythmia; Atrial fibrillation; Genetics, Next-generation sequencing.

Entities:  

Year:  2013        PMID: 27122724      PMCID: PMC4804897     

Source DB:  PubMed          Journal:  Acta Cardiol Sin        ISSN: 1011-6842            Impact factor:   2.672


  37 in total

1.  Analysis and design of RNA sequencing experiments for identifying isoform regulation.

Authors:  Yarden Katz; Eric T Wang; Edoardo M Airoldi; Christopher B Burge
Journal:  Nat Methods       Date:  2010-11-07       Impact factor: 28.547

2.  Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis.

Authors:  Yaniv Erlich; Simon Edvardson; Emily Hodges; Shamir Zenvirt; Pramod Thekkat; Avraham Shaag; Talya Dor; Gregory J Hannon; Orly Elpeleg
Journal:  Genome Res       Date:  2011-04-12       Impact factor: 9.043

Review 3.  Human genetic variation and its contribution to complex traits.

Authors:  Kelly A Frazer; Sarah S Murray; Nicholas J Schork; Eric J Topol
Journal:  Nat Rev Genet       Date:  2009-04       Impact factor: 53.242

Review 4.  Metagenomic pyrosequencing and microbial identification.

Authors:  Joseph F Petrosino; Sarah Highlander; Ruth Ann Luna; Richard A Gibbs; James Versalovic
Journal:  Clin Chem       Date:  2009-03-05       Impact factor: 8.327

5.  Identification of a KCNE2 gain-of-function mutation in patients with familial atrial fibrillation.

Authors:  Yiqing Yang; Min Xia; Qingfeng Jin; Saïd Bendahhou; Jingyi Shi; Yiping Chen; Bo Liang; Jie Lin; Yi Liu; Ban Liu; Qinshu Zhou; Dongwei Zhang; Rong Wang; Ning Ma; Xiaoyan Su; Kaiya Niu; Yan Pei; Wenyuan Xu; Zhaopeng Chen; Haiying Wan; Jianmin Cui; Jacques Barhanin; Yihan Chen
Journal:  Am J Hum Genet       Date:  2004-09-13       Impact factor: 11.025

Review 6.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

7.  Functional genomic study on atrial fibrillation using cDNA microarray and two-dimensional protein electrophoresis techniques and identification of the myosin regulatory light chain isoform reprogramming in atrial fibrillation.

Authors:  Ling-Ping Lai; Jiunn-Lee Lin; Chich-Sheng Lin; Huei-Ming Yeh; Yeou-Guang Tsay; Chwen-Fang Lee; Hsiao-Hui Lee; Zee-Fen Chang; Juey-Jen Hwang; Ming-Jai Su; Yung-Zu Tseng; Shoei K Stephen Huang
Journal:  J Cardiovasc Electrophysiol       Date:  2004-02

8.  TopHat-Fusion: an algorithm for discovery of novel fusion transcripts.

Authors:  Daehwan Kim; Steven L Salzberg
Journal:  Genome Biol       Date:  2011-08-11       Impact factor: 13.583

9.  Predicting the effects of frameshifting indels.

Authors:  Jing Hu; Pauline C Ng
Journal:  Genome Biol       Date:  2012-02-09       Impact factor: 13.583

10.  Targeted capture and massively parallel sequencing of 12 human exomes.

Authors:  Sarah B Ng; Emily H Turner; Peggy D Robertson; Steven D Flygare; Abigail W Bigham; Choli Lee; Tristan Shaffer; Michelle Wong; Arindam Bhattacharjee; Evan E Eichler; Michael Bamshad; Deborah A Nickerson; Jay Shendure
Journal:  Nature       Date:  2009-08-16       Impact factor: 49.962

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