| Literature DB >> 27117083 |
Wei Xu1, Hui-Fu Wang2, Lin Tan3, Meng-Shan Tan1, Chen-Chen Tan1, Xi-Chen Zhu2, Dan Miao1, Wan-Jiang Yu4, Teng Jiang5, Lan Tan1,2,3, Jin-Tai Yu1.
Abstract
Phosphatidylinositolbinding clathrin assembly protein (PICALM) gene is one novel genetic player associated with late-onset Alzheimer's disease (LOAD), based on recent genome wide association studies (GWAS). However, how it affects AD occurrence is still unknown. Brain reserve hypothesis highlights the tolerant capacities of brain as a passive means to fight against neurodegenerations. Here, we took the baseline volume and/or thickness of LOAD-associated brain regions as proxies of brain reserve capacities and investigated whether PICALM genetic variations can influence the baseline reserve capacities and the longitudinal atrophy rate of these specific regions using data from Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. In mixed population, we found that brain region significantly affected by PICALM genetic variations was majorly restricted to posterior cingulate. In sub-population analysis, we found that one PICALM variation (C allele of rs642949) was associated with larger baseline thickness of posterior cingulate in health. We found seven variations in health and two variations (rs543293 and rs592297) in individuals with mild cognitive impairment were associated with slower atrophy rate of posterior cingulate. Our study provided preliminary evidences supporting that PICALM variations render protections by facilitating reserve capacities of posterior cingulate in non-demented elderly.Entities:
Mesh:
Substances:
Year: 2016 PMID: 27117083 PMCID: PMC4846810 DOI: 10.1038/srep24480
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1(A) Depiction of how brain reserve operates to protect the brain. The x-axis represents time, over which AD pathology slowly accumulates. The y-axis represents cognitive function. We assume that AD pathology accumulates over time at the same rate in two individuals with high and low brain reserve (BR). The amount of pathology needed before cognitive function is affected is greater for individual with higher CR, leading to a later change point of time. It follows that greater pathology will be needed for the person with higher BR to meet clinical diagnostic criteria for AD, thus delaying the onset of the disease. Once cognitive decline arises, it is faster in the person with higher BR22. (B) We proposed a hypothesis that PICALM genetic variations were associated with brain reserve (baseline thickness/volume and atrophy rate) of specific regions associated with AD in non-dementia elderly. We hypothesized that individuals carrying specific PICALM variations might have higher baseline thickness/volume of specific brain areas and/or slower atrophy rate in confrontation with impacts of pathological impairments and/or normal aging for some unknown reasons. Based on model depicted in (A), these trends equivalently render two powerful “weapons” for the individuals to maintain normal cognition and stay away from AD over a period longer than others. Abbreviation: BR = brain reserve; AD = Alzheimer’s disease.
The characteristics of the ADNI subjects at baseline.
| Characteristics | NC | MCI | AD | P[ | |||
|---|---|---|---|---|---|---|---|
| Age (years) | 281 | 74.51 ± 5.56 | 483 | 72.28 ± 7.45 | 48 | 75.51 ± 9.23 | <0.01 |
| Gender (male/female) | 281 | 136/145 | 483 | 282/201 | 48 | 30/18 | 0.02 |
| Education (years) | 281 | 16.41 ± 2.66 | 483 | 15.98 ± 2.82 | 48 | 15.73 ± 2.62 | 0.08 |
| APOE ε4 (0/1/2) | 281 | 204/70/7 | 483 | 262/180/41 | 48 | 14/25/9 | <0.01 |
| CDR-SB | 207 | 0.03 ± 0.13 | 406 | 1.44 ± 0.87 | 47 | 4.44 ± 1.69 | <0.01 |
| MMSE | 281 | 29.07 ± 1.15 | 483 | 27.89 ± 1.69 | 48 | 22.96 ± 2.03 | <0.01 |
| ADAS-cog | 281 | 9.06 ± 4.23 | 480 | 15.30 ± 6.65 | 48 | 29.80 ± 8.44 | <0.01 |
| RAVLT | 280 | 44.83 ± 9.60 | 483 | 36.16 ± 10.86 | 47 | 22.32 ± 7.84 | <0.01 |
| FAQ | 281 | 0.17 ± 0.66 | 481 | 2.85 ± 3.99 | 48 | 12.6 ± 7.14 | <0.01 |
| Hippocampus (mm3) | 257 | 7344 ± 895 | 422 | 6996 ± 1126 | 39 | 5757 ± 948 | <0.01 |
| Middle Temporal (mm3) | 257 | 20298 ± 2600 | 422 | 20186 ± 2735 | 39 | 17776 ± 3230 | <0.01 |
| Entorhinal (mm3) | 257 | 3803 ± 650 | 422 | 3610 ± 723 | 39 | 2919 ± 705 | <0.01 |
| CMRgl | 207 | 6.55 ± 0.55 | 406 | 6.32 ± 0.64 | 47 | 5.30 ± 0.72 | <0.01 |
| SUVR | 152 | 1.12 ± 0.19 | 323 | 1.20 ± 0.22 | 46 | 1.39 ± 0.22 | <0.01 |
NC, normal cognition; MCI, mild cognition impairment; AD, Alzheimer’s disease; CDR-SB, Clinical Dementia Rating sum of boxes; ADAS-cog, Alzheimer’s disease Assessment Scale Cognition; MMSE, Mini-Mental State Exam; RAVLT, Rey Auditory Verbal Learning Test; FAQ, Functional Activities Questionnaire; CMRgl, Cerebral Metabolism Rate for glucose measured with fluorodeoxyglucose-positron emission tomography (FDG-PET). SUVR, florbetapir standard uptake value ratios on amyloid imaging.
*P values for continuous variables are from one-way analysis of variance (ANOVA). P values for categorical data are from chi square test.
Data are given as mean ± standard deviation unless otherwise indicated.
Figure 2The procedure and gross results of associations analysis in mixed population and sub-population (NC and MCI).
In mixed population, we identified multiple brain regions showing trend of association with PICALM genetic variations (Deep green block). However, only posterior cingulate survived the FDR correction (Red block); We further tested this genetic predisposition in NC and MCI population. Results in NC individuals indicated that variations of seven loci were associated with baseline or one year or two years atrophy rate of posterior cingulate; Results in MCI individuals indicated that variations of two loci were associated with one year or two years atrophy rate of posterior cingulate. Abbreviations: NC = normal cognition; MCI = mild cognition impairment; AD = Alzheimer’s disease.
Figure 3The significant associations of PICALM loci with atrophy rate of posterior cingulate in the mixed population.
We identified six loci which associations were still significant after FDR correction in the mixed population. The (A–F) depicted that variations of rs1237999, rs642949, rs561655, rs543293, rs7941541 and rs592297 were associated with one-year atrophy rate of posterior cingulate.
Figure 4The significant associations of PICALM loci with baseline thickness and atrophy rate of posterior cingulate in health and MCI individuals.
(A) Depicted that rs642949 (C allele) was associated with larger thickness of posterior cingulate in NC population; (B–I) Depicted that variations of rs561655, rs1237999, rs543293, rs592297, rs7941541 were associated with slower atrophy rate of posterior cingulate in NC population; (J,K) Depicted that rs543293 and rs592297 were associated with slower atrophy rate of posterior cingulate in MCI population. (L) Depicted that the contributors to brain atrophy majorly included normal aging and pathological insults. The proportion of the latter would arise constantly as the stage progresses (from NC to MCI to AD) and finally become the predominant factor. This may explain the difference of association which PICALM genetic variations showed in NC and MCI population. Abbreviations: NC = normal cognition; MCI = mild cognition impairment; AD = Alzheimer’s disease.
Characteristics of seven SNPs finally selected for our analysis.
| N | SNP | Chr | Allele change | Position | SNP source | H-W p value | Reference | MAF |
|---|---|---|---|---|---|---|---|---|
| 1 | rs3851179 | 11 | G→A | 5′ downstream | GWAS | 0.9485 | [Harold | 0.3149 |
| 2 | rs561655 | 11 | A→G | 5′ downstream | GWAS & Meta-analysis | 0.8524 | [Lambert | 0.3407 |
| 3 | rs543293 | 11 | G→A | 5′ downstream | Replication | 0.625 | [Lee | 0.2923 |
| 4 | rs592297 | 11 | T→C | Exon 5 | This SNP is associated with specific PICALM isoform expression level and in strong LD with rs3851179 and is a part of an exonic splice enhancer region in exon 5 | 0.8578 | [Parikh | 0.2113 |
| 5 | rs7941541 | 11 | A→G | 5′ downstream | Replication study | 0.7482 | [Lee | 0.289 |
| 6 | rs1237999 | 11 | A→G | 5′ downstream | GWAS | 0.8185 | [Harold | 0.3297 |
| 7 | rs642949 | 11 | T→C | Intron region of NM_001008660.2 | This SNP is in strong LD with rs592997 | 0.4931 | [Furney | 0.4459 |
Abbreviation: MAF = Minor Allele Frequency; SNP = Single Nucleotide Polymorphism; H-W = Hardy-Weinberg.
#MAF data was calculated by Haploview 4.2.