Literature DB >> 27111439

Correction: Middle East Respiratory Syndrome Coronavirus Intra-Host Populations Are Characterized by Numerous High Frequency Variants.

Monica K Borucki, Victoria Lao, Mona Hwang, Shea Gardner, Danielle Adney, Vincent Munster, Richard Bowen, Jonathan E Allen.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0146251.].

Entities:  

Year:  2016        PMID: 27111439      PMCID: PMC4844146          DOI: 10.1371/journal.pone.0154424

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


In Table 1, the residue for 27162 should be 107, not 109. Please see the corrected Table 1 here.
Table 1

Nonsynonymous mutations occurring at >1% at sites with at least 100 X ORP coverage.

Nt pos.ResidueData typeSEED C1D1 C1D3 C1D5 C2D1 C2D3 C2D5 C3D1 C3D3 C3D5 ORF
2169I631LConsensusA0.985A1.000A0.926A0.938A0.928A0.894A0.931A0.964A0.877A0.962nsp2
  iSNVC0.015NA C0.074C0.062C0.072C0.106C0.069C0.036C0.123C0.038 
3475K1066TConsensusA1.000A1.000A1.000A1.000A1.000A1.000A0.992A1.000A1.000A0.804nsp3
  iSNV0 NA NA NA 0 NA C0.009NA 0 C0.197 
6161L1961VConsensusG1.000G0.9930 G1.000G1.000G1.000G1.000G1.000G1.000G0.892 
  iSNVNA T0.008NA NA NA NA NA NA NA C0.108 
6172F1965SConsensusT0.858C0.5830 C0.812C0.938C0.939C0.955C0.921C1.000C1.000 
  iSNVC0.142T0.417NA T0.188T0.062T0.061T0.045T0.079NA NA  
8050D2591AConsensusA0.941A1.000A1.000A1.000A0.622A0.998A0.994A0.912A0.923A0.922 
  iSNVC0.060NA NA NA C0.378C0.002C0.006C0.088C0.077C0.078 
8614M2779TConsensusT1.0000 0 T0.942T0.8450 0 T0.951T1.000T0.850nsp4
  iSNV0 NA NA C0.058C0.155NA NA C0.050NA C0.150 
9798D3174HConsensusG0.9980 0 G1.000G0.8960 0 G1.000G1.000G1.000 
  iSNVA0.002NA NA NA C0.104NA NA NA NA NA  
13234E4319VConsensusA1.0000 0 A1.000A1.0000 0 A0.855A1.000A0.940nsp10
  iSNV0 NA NA 0 NA NA NA T0.145NA T0.060 
23150E565DConsensusG1.000G1.0000 G1.000G0.884G0.948G0.877G0.814G0.875G0.931S gene
  iSNV0 NA NA 0 T0.116T0.052T0.123T0.186T0.125T0.069 
24474A1007TConsensusG1.0000 0 G0.986G0.721G1.000G0.969G0.820G0.821G0.889 
  iSNVNA NA NA A0.014A0.279NA A0.031A0.180A0.179A0.111 
24499N1015TConsensusA0.8860 0 C0.824C0.959C1.000C1.000C0.970C1.000C1.000 
  iSNVC0.115NA NA A0.176A0.041NA NA A0.030NA NA  
24502N1016SConsensusA0.9860 0 A0.967A1.000A1.000A1.000A0.956A1.000A0.978 
  iSNVG0.014NA NA G0.033NA NA NA G0.044NA G0.022 
24538N1028SConsensusA0.9660 0 A0.710A0.803A1.000G0.698A0.944A0.845A0.956 
  iSNVG0.034NA NA G0.290G0.197NA A0.302G0.056G0.155G0.044 
27162Y107*Consensus0 0 0 0 0 G0.878G0.9440 0 0 orf5
  iSNVNA NA NA NA NA A0.122A0.056NA NA NA  
28464R204SConsensusG1.000G0.638G0.865G0.995G0.998G0.999G0.999G0.999G0.997G0.980M gene
  iSNVNA T0.362T0.100T0.005T0.001T0.001T0.001T0.001T0.002T0.020 
28466S2051ConsensusG0.999G1.000G0.920G0.996G0.997G0.999G0.999G0.998G0.997G0.965 
  iSNVNA NA T0.080T0.004T0.002T0.001T0.001T0.002T0.002T0.025 
28587R8CConsensusC0.993C0.996C0.993C0.990C0.996C0.950C0.996C1.000C1.000C1.000N gene
  iSNVT0.007A0.004T0.007T0.010T0.004T0.050T0.004NA NA NA  
28778L16PConsensusT1.000T1.000T1.000T1.000T0.992T1.000T0.981T0.982T0.996T0.995 
  iSNV0 0 0 0 C0.0080 C0.020C0.018C0.004C0.005 
29734G390VConsensusG1.000G1.000G0.571G0.997G0.935G0.990G0.990G1.000G1.000G0.943 
  iSNVNA NA T0.429C0.003T0.065A0.010A0.005NA NA T0.057 
29737S391IConsensusG0.999G1.000G1.000G0.928G0.906G0.924G1.000G0.932G1.000G0.904 
  iSNVC0.001NA NA T0.072T0.094T0.076NA T0.063NA T0.089 
29747Q394HConsensusG0.9920 G1.000G0.985G0.936G0.800G1.000G0.992G0.876G0.911 
  iSNVA0.008NA NA NA T0.064T0.190NA A0.008T0.124T0.073 
29748R395CConsensusC0.9500 C1.000C0.994C0.973C1.000C1.000C0.940C0.955C0.998 
  iSNVT0.050NA NA A0.006T0.027NA NA T0.058T0.045G0.002 
29782P406LConsensusC1.0000 0 0 C1.000C1.000C1.000T1.000C1.000C0.787 
  iSNV0 NA NA NA NA NA 0 0 NA T0.213 
29783P406LConsensusA1.0000 0 0 A1.000A1.000A1.000G1.000A1.000A0.787 
  iSNV0 NA NA NA NA NA 0 0 NA G0.213 
29784M407IConsensusA1.0000 0 0 A1.000A1.000A1.000T1.000A1.000A0.787 
  iSNV0 NA NA NA NA NA 0 0 NA T0.213 
29788I408SConsensusT1.0000 0 0 T1.000T1.000T1.000T1.000T1.000T0.858 
  iSNVNA NA NA NA NA NA NA NA NA G0.142 
29794V410SConsensus0 0.000 0.000 T1.000T1.000T1.000T1.000T1.000T0.917T1.000 
29794 iSNVNA NA NA NA NA NA NA NA C0.083NA  
There is an incorrect reference to Table 1 in the second sentence of the first paragraph the Results section, “ORF1ab.” The correct sentence is: The Seed stock had iSNVs present at nts 307–313, part of the nsp1 ORF (residues 9–11). All iSNVs were detected at 4% indicating there is a second genotype present at 4%. The incorrect value reported in Table 1 also appears in the first sentence of the Results section, “ORF5.” The correct sentence is An iSNV resulting in a stop codon at residue 107 was detected in 12% of reads at nt 27162 for camel C2D5, the only sample for which there was adequate coverage at this site (>100x, S2 Table).
  1 in total

1.  Middle East Respiratory Syndrome Coronavirus Intra-Host Populations Are Characterized by Numerous High Frequency Variants.

Authors:  Monica K Borucki; Victoria Lao; Mona Hwang; Shea Gardner; Danielle Adney; Vincent Munster; Richard Bowen; Jonathan E Allen
Journal:  PLoS One       Date:  2016-01-20       Impact factor: 3.240

  1 in total
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1.  Zoonotic origin and transmission of Middle East respiratory syndrome coronavirus in the UAE.

Authors:  C R Paden; M F B M Yusof; Z M Al Hammadi; K Queen; Y Tao; Y M Eltahir; E A Elsayed; B A Marzoug; O K A Bensalah; A I Khalafalla; M Al Mulla; A Khudhair; K A Elkheir; Z B Issa; K Pradeep; F N Elsaleh; H Imambaccus; J Sasse; S Weber; M Shi; J Zhang; Y Li; H Pham; L Kim; A J Hall; S I Gerber; F I Al Hosani; S Tong; S S M Al Muhairi
Journal:  Zoonoses Public Health       Date:  2017-12-13       Impact factor: 2.702

2.  Within-Host Diversity of SARS-CoV-2 in COVID-19 Patients With Variable Disease Severities.

Authors:  Hebah A Al Khatib; Fatiha M Benslimane; Israa E Elbashir; Peter V Coyle; Muna A Al Maslamani; Abdullatif Al-Khal; Asmaa A Al Thani; Hadi M Yassine
Journal:  Front Cell Infect Microbiol       Date:  2020-10-06       Impact factor: 5.293

  2 in total

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