| Literature DB >> 27099713 |
Karla Moreno-Torres1, Barbara Wolfe2, William Saville1, Rebecca Garabed3.
Abstract
Prevalence of disease in wildlife populations, which is necessary for developing disease models and conducting epidemiologic analyses, is often understudied. Laboratory tests used to screen for diseases in wildlife populations often are validated only for domestic animals. Consequently, the use of these tests for wildlife populations may lead to inaccurate estimates of disease prevalence. We demonstrate the use of Bayesian latent class analysis (LCA) in determining the specificity and sensitivity of a competitive enzyme-linked immunosorbent assay (cELISA; VMRD (®), Inc.) serologic test used to identify exposure to Neospora caninum (hereafter N. caninum) in three wildlife populations in southeastern Ohio, USA. True prevalence of N. caninum exposure in these populations was estimated to range from 0.1% to 3.1% in American bison (Bison bison), 51.0% to 53.8% in Père David's deer (Elaphurus davidianus), and 40.0% to 45.9% in white-tailed deer (Odocoileus virginianus). The accuracy of the cELISA in American bison and Père David's deer was estimated to be close to the 96% sensitivity and 99% specificity reported by the manufacturer. Sensitivity in white-tailed deer, however, ranged from 78.9% to 99.9%. Apparent prevalence of N. caninum from the test results is not equal to the true prevalence in white-tailed deer and Père David's deer populations. Even when these species inhabit the same community, the true prevalence in the two deer populations differed from the true prevalence in the American bison population. Variances in prevalence for some species suggest differences in the epidemiology of N. caninum for these colocated populations. Bayesian LCA methods could be used as in this example to overcome some of the constraints on validating tests in wildlife species. The ability to accurately evaluate disease status and prevalence in a population improves our understanding of the epidemiology of multihost pathogen systems at the community level.Entities:
Keywords: Antibody test; gold standard; prior distribution; probability intervals; test accuracy; true prevalence
Year: 2016 PMID: 27099713 PMCID: PMC4831453 DOI: 10.1002/ece3.2050
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Published estimates of informative priors
| Parameters | Species | ||
|---|---|---|---|
| American bison ( | Père David's deer ( | White‐tailed deer ( | |
| Prevalence (95% CI) |
0.45 (0.02, 2.9)3
| 25 (11.4, 45.2)5 |
|
| Sensitivity (95% CI) |
96.4 (92.1, 98.5)1
|
78.6 (47.7, 96.7)4
| |
| Specificity (95% CI) |
96.8 (92.4, 98.8)1
|
99 (96.4, 99.7)4
| |
1Baszler et al. (2001); 2Dubey et al. (2009); 3Dubey and Thulliez (2005); 4Pruvot et al. (2014); 5Sedlák and Bártová (2006); 6Wapenaar et al. (2007).
*The mean prevalence was estimated from all six white‐tailed deer published literature, and the range of prevalence is used versus the 95% confidence interval.
Models specifications
| Model | Species | Prevalence | Sensitivity cELISA | Specificity cELISA |
|---|---|---|---|---|
| a1 | American Bison | Beta (0.29, 63.20) | Beta (1,1) | Beta (1,1) |
| a2 | American Bison | Beta (2.60, 16.92) | Beta (1,1) | Beta (1,1) |
| a3 | American Bison | Beta (1,1) | Beta (104.45, 3.90) | Beta (95.27, 3.15) |
| a4 | American Bison | Beta (1,1) | Beta (38.70, 4.78) | Beta (97.21, 0.98) |
| a5 | American Bison | Beta (0.29, 63.20) | Beta (104.45, 3.90) | Beta (95.27, 3.15) |
| a6 | American Bison | Beta (0.29, 63.20) | Beta (38.70, 4.78) | Beta (97.21, 0.98) |
| a7 | American Bison | Beta (2.60, 16.92) | Beta (104.45, 3.90) | Beta (95.27, 3.15) |
| a8 | American Bison | Beta (2.60, 16.92) | Beta (38.70, 4.78) | Beta (97.21, 0.98) |
| b1 | Père David's deer | Beta (5.65, 16.94) | Beta (1,1) | Beta (1,1) |
| b2 | Père David's deer | Beta (1,1) | Beta (6.85, 1.86) | Beta (103.83, 1.05) |
| b3 | Père David's deer | Beta (1,1) | Beta (2.51, 0.63) | Beta (190.31, 6.70) |
| b4 | Père David's deer | Beta (5.65, 16.94) | Beta (6.85, 1.86) | Beta (103.83, 1.05) |
| b5 | Père David's deer | Beta (5.65, 16.94) | Beta (2.51, 0.63) | Beta (190.31, 6.70) |
| c1 | White‐tailed deer | Beta (3.08, 3.36) | Beta (1,1) | Beta (1,1) |
| c2 | White‐tailed deer | Beta (1,1) | Beta (6.85, 1.86) | Beta (103.83, 1.05) |
| c3 | White‐tailed deer | Beta (1,1) | Beta (2.51, 0.63) | Beta (190.31, 6.70) |
| c4 | White‐tailed deer | Beta (3.08, 3.36) | Beta (6.85, 1.86) | Beta (103.83, 1.05) |
| c5 | White‐tailed deer | Beta (3.08, 3.36) | Beta (2.51, 0.63) | Beta (190.31, 6.70) |
American Bison herd prior (mean and [95% confidence interval]) and posterior distributions (mode and [95% probability interval])
| Model | Prior prevalence | Posterior prevalence | Prior sensitivity | Posterior sensitivity | Prior specificity | Posterior specificity |
|---|---|---|---|---|---|---|
| a1 | 0.0045 [0.0002, 0.029] | 0.001 [2.79E‐08, 0.024] | Non‐informative | 0.161 [0.024, 0.974] | Non‐informative | 0.988 [0.935, 0.998] |
| a2 | 0.133 [0.043, 0.316] | 0.108 [0.015, 0.264] | Non‐informative | 0.102 [0.006, 0.842] | Non‐informative | 0.999 [0.935, 0.999] |
| a3 | Non‐informative | 0.011 [5.37E‐04, 0.059] | 0.964 [0.921, 0.985] | 0.973 [0.921, 0.990] | 0.968 [0.924, 0.988] | 0.982 [0.953, 0.995] |
| a4 | Non‐informative | 0.011 [0.001, 0.070] | 0.890 [0.79, 0.98] | 0.897 [0.778, 0.963] | 0.990 [0.97, 1.00] | 0.999 [0.975, 0.999] |
| a5 | 0.0045 [0.0002, 0.029] | 0.001 [2.09E‐08, 0.017] | 0.964 [0.921, 0.985] | 0.972 [0.922, 0.990] | 0.968 [0.924, 0.988] | 0.982 [0.951, 0.994] |
| a6 | 0.0045 [0.0002, 0.029] | 0.010, 0.011 [4.07E‐08, 0.022] | 0.890 [0.79, 0.98] | 0.907 [0.783, 0.964] | 0.990 [0.97, 1.00] | 0.996 [0.971, 0.999] |
| a7 | 0.133 [0.043, 0.316] | 0.016 [0.006, 0.078] | 0.964 [0.921, 0.985] | 0.973 [0.920, 0.990] | 0.968 [0.924, 0.988] | 0.987 [0.954, 0.995] |
| a8 | 0.133 [0.043, 0.316] | 0.031 [0.008, 0.087] | 0.890 [0.79, 0.98] | 0.910 [0.773, 0.962] | 0.990 [0.97, 1.00] | 0.999 [0.977, 0.999] |
Père David's deer herd prior (mean and [95% confidence interval]) and posterior distributions (mode and [95% probability interval])
| Model | Prior prevalence | Posterior prevalence | Prior sensitivity | Posterior sensitivity | Prior specificity | Posterior specificity |
|---|---|---|---|---|---|---|
| b1 | 0.25 [0.114, 0.452] | 0.235 [0.103, 0.444] | Non‐informative | 0.619, 0.679, 0.877 [0.032, 0.976] | Non‐informative | 0.264 [0.035, 0.563] |
| b2 | Non‐informative | 0.779 [0.594, 0.986] | 0.786 [0.477, 0.967] | 0.882 [0.638, 0.974] | 0.990 [0.964, 0.997] | 0.999 [0.964, 0.999] |
| b3 | Non‐informative | 0.715, 0.742 [0.549, 0.979] | 0.800 0.298, 0.989] | 0.999 [0.642, 0.999] | 0.966 [0.935, 0.983] | 0.968 [0.936, 0.986] |
| b4 | 0.25 [0.114, 0.452] | 0.538 [0.403, 0.666] | 0.786 [0.477, 0.967] | 0.959 [0.787, 0.990] | 0.990 [0.964, 0.997] | 0.999 [0.959, 0.999] |
| b5 | 0.25 [0.114, 0.452] | 0.511 [0.383, 0.647 | 0.800 0.298, 0.989] | 0.999 [0.839, 0.999] | 0.966 [0.935, 0.983] | 0.967, 0.968 [0.932, 0.986] |
White‐tailed deer herd prior (mean and [range]) and posterior distributions (mode and [95% probability interval])
| Model | Prior prevalence | Posterior prevalence | Prior sensitivity | Posterior sensitivity | Prior specificity | Posterior specificity |
|---|---|---|---|---|---|---|
| c1 | 0.478 [0.20, 0.882] | 0.378, 0.516 [0.152, 0.817] | Non‐informative | 0.254 [0.025, 0.929] | Non‐informative | 0.664, 0.744 [0.086, 0.973] |
| c2 | Non‐informative | 0.397 [0.257, 0.859] | 0.786 [0.477, 0.967] | 0.902 [0.4668, 0.9691 | 0.990 [0.964, 0.997] | 0.999 [0.964, 0.999] |
| c3 | Non‐informative | 0.423 [0.222, 0.916] | 0.800 [0.298, 0.989] | 0.999 [0.379, 0.9985] | 0.966 [0.935, 0.983] | 0.969 [0.936, 0.986] |
| c4 | 0.478 [0.20, 0.882] | 0.459 [0.273, 0.730] | 0.786 [0.477, 0.967] | 0.789, 0.859 [0.512, 0.969] | 0.990 [0.964, 0.997] | 0.999 [0.964, 0.999] |
| c5 | 0.478 [0.20, 0.882] | 0.401 [0.243, 0.747] | 0.800 [0.298, 0.989] | 0.999 [0.442, 0.999] | 0.966 [0.935, 0.983] | 0.973 [0.936, 0.986] |
Apparent prevalence versus true prevalence
| Species | Apparent prevalence [95% CI] | True prevalence |
|---|---|---|
| American Bison | 1.23% [0.06, 7.6] | 1.6% [0.6, 7.8] |
| Père David's deer | 68.4% [51, 82] | 53.8% [40.3, 66.6] |
| White‐tailed deer | 36.7% [20.5, 56] | 45.9% [27.3, 73] |
*The mode of models a7, b4, and c4 were selected to represent true prevalence.
Figure 1Compared true prevalence by species. Models a7, b4, and c4 were selected to represent true prevalence. The mode of true prevalence was 1.6% for American bison, 53.8% for Père David's deer, and 45.9% for white‐tailed deer.
The three species pairwise true prevalence comparison
| Difference of the pairwise species comparison Mode [95%PI] | |
|---|---|
| Père David's deer–American Bison | 0.49 [0.36 to 0.63] |
| White‐tailed deer–American Bison | 0.46 [0.23 to 0.69] |
| White‐tailed deer–Père David's deer | −0.11 [−0.30 to 0.22] |
Models a7, b4, and c4 were selected to determine the difference of the TP by species.