Literature DB >> 27096373

In situ imaging reveals the biomass of giant protists in the global ocean.

Tristan Biard1,2, Lars Stemmann2, Marc Picheral2, Nicolas Mayot2, Pieter Vandromme3, Helena Hauss3, Gabriel Gorsky2, Lionel Guidi2, Rainer Kiko3, Fabrice Not1.   

Abstract

Planktonic organisms play crucial roles in oceanic food webs and global biogeochemical cycles. Most of our knowledge about the ecological impact of large zooplankton stems from research on abundant and robust crustaceans, and in particular copepods. A number of the other organisms that comprise planktonic communities are fragile, and therefore hard to sample and quantify, meaning that their abundances and effects on oceanic ecosystems are poorly understood. Here, using data from a worldwide in situ imaging survey of plankton larger than 600 μm, we show that a substantial part of the biomass of this size fraction consists of giant protists belonging to the Rhizaria, a super-group of mostly fragile unicellular marine organisms that includes the taxa Phaeodaria and Radiolaria (for example, orders Collodaria and Acantharia). Globally, we estimate that rhizarians in the top 200 m of world oceans represent a standing stock of 0.089 Pg carbon, equivalent to 5.2% of the total oceanic biota carbon reservoir. In the vast oligotrophic intertropical open oceans, rhizarian biomass is estimated to be equivalent to that of all other mesozooplankton (plankton in the size range 0.2-20 mm). The photosymbiotic association of many rhizarians with microalgae may be an important factor in explaining their distribution. The previously overlooked importance of these giant protists across the widest ecosystem on the planet changes our understanding of marine planktonic ecosystems.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27096373     DOI: 10.1038/nature17652

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  12 in total

1.  Small phytoplankton and carbon export from the surface ocean.

Authors:  Tammi L Richardson; George A Jackson
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

2.  Marine biodiversity, ecosystem functioning, and carbon cycles.

Authors:  Grégory Beaugrand; Martin Edwards; Louis Legendre
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

3.  Global latitudinal variations in marine copepod diversity and environmental factors.

Authors:  Isabelle Rombouts; Grégory Beaugrand; Frédéric Ibanez; Stéphane Gasparini; Sanae Chiba; Louis Legendre
Journal:  Proc Biol Sci       Date:  2009-06-10       Impact factor: 5.349

4.  Primary production of the biosphere: integrating terrestrial and oceanic components

Authors: 
Journal:  Science       Date:  1998-07-10       Impact factor: 47.728

5.  Ocean plankton. Determinants of community structure in the global plankton interactome.

Authors:  Gipsi Lima-Mendez; Karoline Faust; Nicolas Henry; Johan Decelle; Sébastien Colin; Fabrizio Carcillo; Samuel Chaffron; J Cesar Ignacio-Espinosa; Simon Roux; Flora Vincent; Lucie Bittner; Youssef Darzi; Jun Wang; Stéphane Audic; Léo Berline; Gianluca Bontempi; Ana M Cabello; Laurent Coppola; Francisco M Cornejo-Castillo; Francesco d'Ovidio; Luc De Meester; Isabel Ferrera; Marie-José Garet-Delmas; Lionel Guidi; Elena Lara; Stéphane Pesant; Marta Royo-Llonch; Guillem Salazar; Pablo Sánchez; Marta Sebastian; Caroline Souffreau; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Gabriel Gorsky; Fabrice Not; Hiroyuki Ogata; Sabrina Speich; Lars Stemmann; Jean Weissenbach; Patrick Wincker; Silvia G Acinas; Shinichi Sunagawa; Peer Bork; Matthew B Sullivan; Eric Karsenti; Chris Bowler; Colomban de Vargas; Jeroen Raes
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

6.  Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

Authors:  Colomban de Vargas; Stéphane Audic; Nicolas Henry; Johan Decelle; Frédéric Mahé; Ramiro Logares; Enrique Lara; Cédric Berney; Noan Le Bescot; Ian Probert; Margaux Carmichael; Julie Poulain; Sarah Romac; Sébastien Colin; Jean-Marc Aury; Lucie Bittner; Samuel Chaffron; Micah Dunthorn; Stefan Engelen; Olga Flegontova; Lionel Guidi; Aleš Horák; Olivier Jaillon; Gipsi Lima-Mendez; Julius Lukeš; Shruti Malviya; Raphael Morard; Matthieu Mulot; Eleonora Scalco; Raffaele Siano; Flora Vincent; Adriana Zingone; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Silvia G Acinas; Peer Bork; Chris Bowler; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Jeroen Raes; Michael E Sieracki; Sabrina Speich; Lars Stemmann; Shinichi Sunagawa; Jean Weissenbach; Patrick Wincker; Eric Karsenti
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

7.  Rhizaria.

Authors:  Fabien Burki; Patrick J Keeling
Journal:  Curr Biol       Date:  2014-02-03       Impact factor: 10.834

8.  Reconciliation of the carbon budget in the ocean's twilight zone.

Authors:  Sarah L C Giering; Richard Sanders; Richard S Lampitt; Thomas R Anderson; Christian Tamburini; Mehdi Boutrif; Mikhail V Zubkov; Chris M Marsay; Stephanie A Henson; Kevin Saw; Kathryn Cook; Daniel J Mayor
Journal:  Nature       Date:  2014-03-19       Impact factor: 49.962

9.  Open science resources for the discovery and analysis of Tara Oceans data.

Authors:  Stéphane Pesant; Fabrice Not; Marc Picheral; Stefanie Kandels-Lewis; Noan Le Bescot; Gabriel Gorsky; Daniele Iudicone; Eric Karsenti; Sabrina Speich; Romain Troublé; Céline Dimier; Sarah Searson
Journal:  Sci Data       Date:  2015-05-26       Impact factor: 6.444

10.  Microbial control of the dark end of the biological pump.

Authors:  Gerhard J Herndl; Thomas Reinthaler
Journal:  Nat Geosci       Date:  2013-09-01       Impact factor: 16.908

View more
  32 in total

1.  Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.

Authors:  Tristan Biard; Estelle Bigeard; Stéphane Audic; Julie Poulain; Andres Gutierrez-Rodriguez; Stéphane Pesant; Lars Stemmann; Fabrice Not
Journal:  ISME J       Date:  2017-03-24       Impact factor: 10.302

Review 2.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

3.  Ocean science: The rise of Rhizaria.

Authors:  David A Caron
Journal:  Nature       Date:  2016-04-20       Impact factor: 49.962

4.  Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance.

Authors:  S G Leles; A Mitra; K J Flynn; D K Stoecker; P J Hansen; A Calbet; G B McManus; R W Sanders; D A Caron; F Not; G M Hallegraeff; P Pitta; J A Raven; M D Johnson; P M Glibert; S Våge
Journal:  Proc Biol Sci       Date:  2017-08-16       Impact factor: 5.349

Review 5.  An overview of dinucleotide and codon usage in all viruses.

Authors:  Diego Simón; Juan Cristina; Héctor Musto
Journal:  Arch Virol       Date:  2022-04-25       Impact factor: 2.574

6.  High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding.

Authors:  Andres Gutierrez-Rodriguez; Michael R Stukel; Adriana Lopes Dos Santos; Tristan Biard; Renate Scharek; Daniel Vaulot; Michael R Landry; Fabrice Not
Journal:  ISME J       Date:  2018-12-11       Impact factor: 10.302

Review 7.  Tara Oceans: towards global ocean ecosystems biology.

Authors:  Shinichi Sunagawa; Silvia G Acinas; Peer Bork; Chris Bowler; Damien Eveillard; Gabriel Gorsky; Lionel Guidi; Daniele Iudicone; Eric Karsenti; Fabien Lombard; Hiroyuki Ogata; Stephane Pesant; Matthew B Sullivan; Patrick Wincker; Colomban de Vargas
Journal:  Nat Rev Microbiol       Date:  2020-05-12       Impact factor: 60.633

8.  Plankton networks driving carbon export in the oligotrophic ocean.

Authors:  Lionel Guidi; Samuel Chaffron; Lucie Bittner; Damien Eveillard; Abdelhalim Larhlimi; Simon Roux; Youssef Darzi; Stephane Audic; Léo Berline; Jennifer Brum; Luis Pedro Coelho; Julio Cesar Ignacio Espinoza; Shruti Malviya; Shinichi Sunagawa; Céline Dimier; Stefanie Kandels-Lewis; Marc Picheral; Julie Poulain; Sarah Searson; Lars Stemmann; Fabrice Not; Pascal Hingamp; Sabrina Speich; Mick Follows; Lee Karp-Boss; Emmanuel Boss; Hiroyuki Ogata; Stephane Pesant; Jean Weissenbach; Patrick Wincker; Silvia G Acinas; Peer Bork; Colomban de Vargas; Daniele Iudicone; Matthew B Sullivan; Jeroen Raes; Eric Karsenti; Chris Bowler; Gabriel Gorsky
Journal:  Nature       Date:  2016-02-10       Impact factor: 49.962

9.  Common species link global ecosystems to climate change: dynamical evidence in the planktonic fossil record.

Authors:  Bjarte Hannisdal; Kristian Agasøster Haaga; Trond Reitan; David Diego; Lee Hsiang Liow
Journal:  Proc Biol Sci       Date:  2017-07-12       Impact factor: 5.349

10.  Plankton classification with high-throughput submersible holographic microscopy and transfer learning.

Authors:  Liam MacNeil; Sergey Missan; Junliang Luo; Thomas Trappenberg; Julie LaRoche
Journal:  BMC Ecol Evol       Date:  2021-06-16
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.