| Literature DB >> 27094978 |
Chaker Aloui1,2, Antoine Prigent1,2, Sofiane Tariket1, Caroline Sut1, Jocelyne Fagan2, Fabrice Cognasse1,2, Tahar Chakroun3, Olivier Garraud1,4, Sandrine Laradi1,2.
Abstract
Increased circulating soluble CD40 ligand (sCD40L) is commonly associated with inflammatory disorders. We aimed to investigate whether gene polymorphisms in CD40LG, CD40 and ITGA2 are associated with a propensity to secrete sCD40L; thus, we examined this issue at the level of human platelets, the principal source of sCD40L. We performed single polymorphism and haplotype analyses to test for the effect of twelve polymorphisms across the CD40LG, CD40 and ITGA2 genes in blood donors. ITGA2 presented a positive association with rs1126643, with a significant modification in sCD40L secretion (carriers of C allele, P = 0.02), unlike the investigated CD40LG and CD40 polymorphisms. One CD40LG haplotype (TGGC) showing rs975379 (C/T), rs3092952 (A/G), rs3092933 (A/G) and rs3092929 (A/C) was associated with increased sCD40L levels (1.906 μg/L (95% CI: 1.060 to 2.751); P = 0.000009). The sCD40L level was associated with the inter-chromosomal CD40LG/CD40/ITGA2 haplotype (ATC), displaying rs3092952 (A/G), rs1883832 (C/T) and rs1126643 (C/T), with increased sCD40L levels (P = 0.0135). Our results help to decipher the genetic role of CD40LG, CD40 and ITGA2 with regard to sCD40L levels found in platelet components. Given the crucial role of sCD40L, this haplotype study in a transfusion model may be helpful to further determine the role of haplotypes in inflammatory clinical settings.Entities:
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Year: 2016 PMID: 27094978 PMCID: PMC4837387 DOI: 10.1038/srep24715
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Frequency distribution of CD40LG, CD40 and ITGA2 genotypes, considering sCD40L level, on the day of preparation (D0) and on the day of PC delivery (Ddel).
| Gene | Polymorphism | Genotype | N | D0: Median (1st–3rdQuartile) | p-value | Ddel: Median (1st–3rd Quartile) | p-value |
|---|---|---|---|---|---|---|---|
| rs3092952 | AA+A | 69 | 560.34 (336.82–916.4) | 0. 99 | 854. 78 (534. 26–1148. 66) | 0. 33 | |
| AG | 43 | 496.44 (303.98–967.47) | 781. 84 (472. 23–1266. 56) | ||||
| GG+G | 30 | 589.45 (362.42–791.13) | 1121. 455 (564. 897–1353. 59) | ||||
| CACA | 26+/other | 37 | 498.36 (336.82–1123.88) | 0. 55 | 746. 72 (431–1266. 56) | 0. 3 | |
| Only 26 | 24 | 444.4 (230.86–898.925) | 682. 74 (515. 15–1253. 45) | ||||
| No 26 | 81 | 556 (361.88–908.76) | 924. 54 (584. 18–1251. 6) | ||||
| rs975379 | CC+C | 70 | 547.5 (340.265–914.49) | 1 | 853. 91 (535. 15–1144. 325 | 0. 35 | |
| CT | 42 | 502.08 (301.73–973.085) | 799. 8 (471. 455–1266. 56) | ||||
| TT+T | 30 | 589.45 (362.42–791.13) | 1121. 455 (564. 898–1353. 59) | ||||
| rs3092948 | CC+C | 66 | 589.93 (340.265–920.075) | 0. 9 | 865. 64 (526. 025–1187. 405) | 0. 47 | |
| CG | 44 | 494.97 (306.23–961.855) | 799. 8 (473. 005–1266. 56) | ||||
| GG+G | 32 | 527.18 (360.925–765.35) | 1084. 295 (573. 613–1347. 33) | ||||
| rs3092945 | CC+C | 6 | 875.95 (531.935–1022.295) | 0. 31 | 1186. 315 (694. 273–1256. 79) | 0. 25 | |
| TC | 22 | 364.16 (272.27–834.385) | 678. 66 (471. 455–1079. 625) | ||||
| TT+T | 114 | 581.25 (358.115–914.49) | 900. 52 (542. 5–1340. 11) | ||||
| rs715762 | CC+C | 127 | 546.48 (345.99–924.24) | 0. 6 | 853. 04 (517. 89–1255. 06) | 0. 32 | |
| CT | 8 | 370.36 (271.215–706.9) | 851. 46 (515. 415–1158. 05) | ||||
| TT+T | 7 | 642.6 (430.32–930.08) | 1199. 83 (940. 05–1350. 46) | ||||
| rs3092933 | AA+A | 14 | 693.37 (391.3–791.13) | 0. 9 | 944. 07 (516. 2–1226. 195) | 0. 56 | |
| GA | 37 | 546.48 (362.84–927.18) | 932. 62 (560. 54–1594. 4) | ||||
| GG+G | 91 | 498.36 (295.56–949.43) | 839. 96 (536. 1–1200. 075) | ||||
| rs3092929 | AA+A | 80 | 495.34 (284.07–898.925) | 0. 34 | 847. 37 (574. 81–1234. 04) | 0. 55 | |
| AC | 38 | 494.97 (359.945–986.99) | 835. 4 (452. 68–1256. 1) | ||||
| CC+C | 24 | 693.37 (408.945–918.54) | 1037. 81 (571. 483–1275. 85) | ||||
| rs3092927 | AA+A | 22 | 693.37 (419.265–892.89) | 0. 3 | 1084. 295 (558. 508–1310. 51) | 0. 58 | |
| GA | 39 | 496.44 (372.19–987.97) | 853. 04 (456. 06–1245. 64) | ||||
| GG+G | 81 | 492.32 (288.94–893.1) | 839. 96 (556–1223. 2) | ||||
| rs3092920 | GG+G | 77 | 498.36 (288.94–893.1) | 0. 44 | 876. 5 (556–1266. 56) | 0. 83 | |
| GT | 39 | 546.48 (381.58–1060.56) | 818. 48 (453. 36–1245. 64) | ||||
| TT+T | 26 | 632.57 (382.26–834.965) | 980. 34 (516. 2–1256. 79) | ||||
| rs1883832 | CC | 82 | 553.41 (338.47–910.575) | 0. 93 | 895. 93 (591. 49–1244. 88) | 0. 62 | |
| CT | 52 | 531.86 (312.11–922.77) | 865. 64 (467. 36–1271. 075) | ||||
| TT | 8 | 451.22 (377.53–1087.42) | 544. 175 (386. 4–1472. 04) | ||||
| rs1126643 | CC | 53 | 534.66 (299.48–868.98) | 0. 08 | 876. 5 (490. 7–1224. 72) | 0. 02 | |
| CT | 64 | 647.6 (361.455–1009.2) | 998. 95 (639. 67–1621. 995) | ||||
| TT | 25 | 401.28 (218.04–657.18) | 691. 5 (454. 72–942. 56) |
The association analysis between sCD40L level and rs1126643 in ITGA2 on the day of delivery is detailed as follows: CC vs CT = 0.095; CC vs TT = 0.167; TT vs CT = 0.006.
Frequency distribution of CD40LG haplotypes in PCs and their interaction with sCD40L level, considering sCD40L level, on the day of preparation (D0) and on the day of PC delivery (Ddel).
| Haplotype interaction with sCD40L | ||||||
|---|---|---|---|---|---|---|
| Haplotype | Frequency (N = 142) | sCD40L mean (95% CI) at D0 | P-value | sCD40L mean (95% CI) at Ddel | P-value | |
| H1 | CAGA | 0.578 | −0.122 (−0.776−0.531) | reference | 0.470 (−0.098–1.040) | reference |
| H2 | CAGC | 0.057 | 0.172 (−0.922–0.127) | 0.484 | 0.203 (−0.978–1.384) | 0.594 |
| H3 | TGGA | 0.105 | −0.037 (−0.690–0.615) | 0.698 | 0.353 (−0.336–1.043) | 0.639 |
| H4 | −0743 (−1.357 −1.208) | 0.927 | 0.000009* | |||
| H5 | TGAC | 0.210 | −0.123 (−0.829–0.583) | 0.997 | 0.509 (−0,272–1.291) | 0.843 |
| Other | 0.024 | |||||
Data represent the mean and relative 95% CI of the difference in platelet supernatant sCD40L levels (μg/L) observed in one copy of each haplotype configuration compared with the reference haplotype. Haplotypes (Hn) are indicated in ACGT format with rs975379 (C/T), rs3092952 (A/G), rs3092933 (A/G) and rs3092929 (A/C). The data are boldfaced if the corresponding haplotypes show a significant P-value (<0.05). All data were adjusted for gender, age and platelet count. Data on Ddel were further adjusted for the number of days before delivery.
Frequency distribution of CD40LG/CD40/ ITGA2 haplotypes in PCs and their interaction with sCD40L levels.
| Haplotype interaction with sCD40L | ||||||
|---|---|---|---|---|---|---|
| Haplotype | Frequency (N = 142) | sCD40L mean (95% CI) at D0 | P-value | sCD40L mean (95% CI) at Ddel | P-value | |
| HA | ACC | 0.277 | −0.118 (−0.461–0.226) | reference | 0.248 (−0.345–0.531) | reference |
| HB | ACT | 0.226 | −0.097 (−0.423–0.228) | 0.869 | 0.293 (−0.444–0.631) | 0.768 |
| 0.0135* | 0.242 (−0.195–0.678) | 0.975 | ||||
| HD | ATT | 0.033 | −0.201 (−1.083–0.681) | 0.857 | 0.301 (0.188–0.789) | 0.827 |
| HE | GCC | 0.161 | −0.084 (−0.398 −0.231) | 0.828 | 0.390 (0.009 −0.771) | 0.350 |
| HF | GCT | 0.093 | −0.002 (−0.343–0.340) | 0.394 | 0.145 (−0.426–0.717) | 0.715 |
| HG | GTC | 0.058 | −0.141 (−0.820–0.539) | 0.936 | 0.553 (0.235–0.872) | 0.071 |
| HH | GTT | 0.044 | −0.201 (−0.108–0.681) | 0.993 | 0.130 (−0,694–0.954) | 0.754 |
Data represent the mean and relative 95% CI of the difference in platelet supernatant sCD40L levels (μg/L) observed in one copy of each haplotype configuration compared with the reference haplotype. Haplotypes (Hn) are indicated in ACGT format with rs3092952 (A/G), rs1883832 (C/T) and rs1126643 (C/T). The data are boldfaced if the corresponding haplotypes show significant P-values (<0.05). All data were adjusted for gender, age and platelet count. Data on Ddel were further adjusted for number of days before delivery.
Figure 1Representative LD plot of the two haplotype blocks at CD40LG and the tagged SNPs used for the haplotype association.