Literature DB >> 27094857

A recurrent de novo CTBP1 mutation is associated with developmental delay, hypotonia, ataxia, and tooth enamel defects.

David B Beck1, Megan T Cho2, Francisca Millan2, Carin Yates2, Mark Hannibal3, Bridget O'Connor3, Marwan Shinawi4, Anne M Connolly5, Darrel Waggoner6, Sara Halbach6, Brad Angle7, Victoria Sanders7, Yufeng Shen8, Kyle Retterer2, Amber Begtrup2, Renkui Bai2, Wendy K Chung9.   

Abstract

Exome sequencing is an effective way to identify genetic causes of etiologically heterogeneous conditions such as developmental delay and intellectual disabilities. Using exome sequencing, we have identified four patients with similar phenotypes of developmental delay, intellectual disability, failure to thrive, hypotonia, ataxia, and tooth enamel defects who all have the same de novo R331W missense variant in C-terminal binding protein 1 (CTBP1). CTBP1 is a transcriptional regulator critical for development by coordinating different regulatory pathways. The R331W variant found in these patients is within the C-terminal portion of the PLDLS (Pro-Leu-Asp-Leu-Ser) binding cleft, which is the domain through which CTBP1, interacts with chromatin-modifying enzymes and mediates chromatin-dependent gene repression pathways. This is the first report of mutations within CTBP1 in association with any human disease.

Entities:  

Keywords:  Ataxia; CTBP1; Chromatin; Developmental delay; Enamel defects; Hypotonia; Whole exome sequencing

Mesh:

Substances:

Year:  2016        PMID: 27094857     DOI: 10.1007/s10048-016-0482-4

Source DB:  PubMed          Journal:  Neurogenetics        ISSN: 1364-6745            Impact factor:   2.660


  27 in total

1.  Coordinated histone modifications mediated by a CtBP co-repressor complex.

Authors:  Yujiang Shi; Jun-ichi Sawada; Guangchao Sui; El Bachir Affar; Johnathan R Whetstine; Fei Lan; Hidesato Ogawa; Margaret Po-Shan Luke; Yoshihiro Nakatani; Yang Shi
Journal:  Nature       Date:  2003-04-17       Impact factor: 49.962

2.  MutationTaster evaluates disease-causing potential of sequence alterations.

Authors:  Jana Marie Schwarz; Christian Rödelsperger; Markus Schuelke; Dominik Seelow
Journal:  Nat Methods       Date:  2010-08       Impact factor: 28.547

3.  Role of the PLDLS-binding cleft region of CtBP1 in recruitment of core and auxiliary components of the corepressor complex.

Authors:  M Kuppuswamy; S Vijayalingam; Ling-Jun Zhao; Yun Zhou; T Subramanian; Jan Ryerse; G Chinnadurai
Journal:  Mol Cell Biol       Date:  2007-10-29       Impact factor: 4.272

Review 4.  De novo mutations in human genetic disease.

Authors:  Joris A Veltman; Han G Brunner
Journal:  Nat Rev Genet       Date:  2012-07-18       Impact factor: 53.242

5.  A human protein atlas for normal and cancer tissues based on antibody proteomics.

Authors:  Mathias Uhlén; Erik Björling; Charlotta Agaton; Cristina Al-Khalili Szigyarto; Bahram Amini; Elisabet Andersen; Ann-Catrin Andersson; Pia Angelidou; Anna Asplund; Caroline Asplund; Lisa Berglund; Kristina Bergström; Harry Brumer; Dijana Cerjan; Marica Ekström; Adila Elobeid; Cecilia Eriksson; Linn Fagerberg; Ronny Falk; Jenny Fall; Mattias Forsberg; Marcus Gry Björklund; Kristoffer Gumbel; Asif Halimi; Inga Hallin; Carl Hamsten; Marianne Hansson; My Hedhammar; Görel Hercules; Caroline Kampf; Karin Larsson; Mats Lindskog; Wald Lodewyckx; Jan Lund; Joakim Lundeberg; Kristina Magnusson; Erik Malm; Peter Nilsson; Jenny Odling; Per Oksvold; Ingmarie Olsson; Emma Oster; Jenny Ottosson; Linda Paavilainen; Anja Persson; Rebecca Rimini; Johan Rockberg; Marcus Runeson; Asa Sivertsson; Anna Sköllermo; Johanna Steen; Maria Stenvall; Fredrik Sterky; Sara Strömberg; Mårten Sundberg; Hanna Tegel; Samuel Tourle; Eva Wahlund; Annelie Waldén; Jinghong Wan; Henrik Wernérus; Joakim Westberg; Kenneth Wester; Ulla Wrethagen; Lan Lan Xu; Sophia Hober; Fredrik Pontén
Journal:  Mol Cell Proteomics       Date:  2005-08-27       Impact factor: 5.911

6.  G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis.

Authors:  Makoto Tachibana; Kenji Sugimoto; Masami Nozaki; Jun Ueda; Tsutomu Ohta; Misao Ohki; Mikiko Fukuda; Naoki Takeda; Hiroyuki Niida; Hiroyuki Kato; Yoichi Shinkai
Journal:  Genes Dev       Date:  2002-07-15       Impact factor: 11.361

7.  The usefulness of whole-exome sequencing in routine clinical practice.

Authors:  Alejandro Iglesias; Kwame Anyane-Yeboa; Julia Wynn; Ashley Wilson; Megan Truitt Cho; Edwin Guzman; Rebecca Sisson; Claire Egan; Wendy K Chung
Journal:  Genet Med       Date:  2014-06-05       Impact factor: 8.822

8.  Genic intolerance to functional variation and the interpretation of personal genomes.

Authors:  Slavé Petrovski; Quanli Wang; Erin L Heinzen; Andrew S Allen; David B Goldstein
Journal:  PLoS Genet       Date:  2013-08-22       Impact factor: 5.917

9.  Clinical application of whole-exome sequencing across clinical indications.

Authors:  Kyle Retterer; Jane Juusola; Megan T Cho; Patrik Vitazka; Francisca Millan; Federica Gibellini; Annette Vertino-Bell; Nizar Smaoui; Julie Neidich; Kristin G Monaghan; Dianalee McKnight; Renkui Bai; Sharon Suchy; Bethany Friedman; Jackie Tahiliani; Daniel Pineda-Alvarez; Gabriele Richard; Tracy Brandt; Eden Haverfield; Wendy K Chung; Sherri Bale
Journal:  Genet Med       Date:  2015-12-03       Impact factor: 8.822

10.  Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models.

Authors:  Hashem A Shihab; Julian Gough; David N Cooper; Peter D Stenson; Gary L A Barker; Keith J Edwards; Ian N M Day; Tom R Gaunt
Journal:  Hum Mutat       Date:  2012-11-02       Impact factor: 4.878

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  7 in total

1.  A pathogenic CtBP1 missense mutation causes altered cofactor binding and transcriptional activity.

Authors:  David B Beck; T Subramanian; S Vijayalingam; Uthayashankar R Ezekiel; Sandra Donkervoort; Michele L Yang; Holly A Dubbs; Xilma R Ortiz-Gonzalez; Shenela Lakhani; Devorah Segal; Margaret Au; John M Graham; Sumit Verma; Darrel Waggoner; Marwan Shinawi; Carsten G Bönnemann; Wendy K Chung; G Chinnadurai
Journal:  Neurogenetics       Date:  2019-04-30       Impact factor: 2.660

2.  De novo CTBP1 variant is associated with decreased mitochondrial respiratory chain activities.

Authors:  Ewen W Sommerville; Charlotte L Alston; Angela Pyle; Langping He; Gavin Falkous; Karen Naismith; Patrick F Chinnery; Robert McFarland; Robert W Taylor
Journal:  Neurol Genet       Date:  2017-09-22

3.  Whole-exome sequencing on deceased fetuses with ultrasound anomalies: expanding our knowledge of genetic disease during fetal development.

Authors:  Carin L Yates; Kristin G Monaghan; Deborah Copenheaver; Kyle Retterer; Julie Scuffins; Cathlin R Kucera; Bethany Friedman; Gabriele Richard; Jane Juusola
Journal:  Genet Med       Date:  2017-04-20       Impact factor: 8.822

4.  The Exome Clinic and the role of medical genetics expertise in the interpretation of exome sequencing results.

Authors:  Dustin Baldridge; Jennifer Heeley; Marisa Vineyard; Linda Manwaring; Tomi L Toler; Emily Fassi; Elise Fiala; Sarah Brown; Charles W Goss; Marcia Willing; Dorothy K Grange; Beth A Kozel; Marwan Shinawi
Journal:  Genet Med       Date:  2017-03-02       Impact factor: 8.822

Review 5.  Recent advances in understanding the molecular genetic basis of mitochondrial disease.

Authors:  Kyle Thompson; Jack J Collier; Ruth I C Glasgow; Fiona M Robertson; Angela Pyle; Emma L Blakely; Charlotte L Alston; Monika Oláhová; Robert McFarland; Robert W Taylor
Journal:  J Inherit Metab Dis       Date:  2019-05-10       Impact factor: 4.750

6.  Human iPSC-Derived Neuronal Cells From CTBP1-Mutated Patients Reveal Altered Expression of Neurodevelopmental Gene Networks.

Authors:  S Vijayalingam; Uthayashanker R Ezekiel; Fenglian Xu; T Subramanian; Elizabeth Geerling; Brittany Hoelscher; KayKay San; Aravinda Ganapathy; Kyle Pemberton; Eric Tycksen; Amelia K Pinto; James D Brien; David B Beck; Wendy K Chung; Christina A Gurnett; G Chinnadurai
Journal:  Front Neurosci       Date:  2020-10-27       Impact factor: 4.677

Review 7.  Mitochondrial Dysfunction: A Common Denominator in Neurodevelopmental Disorders?

Authors:  Xilma R Ortiz-González
Journal:  Dev Neurosci       Date:  2021-08-03       Impact factor: 3.421

  7 in total

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