Literature DB >> 27091129

Genetic mapping of SrCad and SNP marker development for marker-assisted selection of Ug99 stem rust resistance in wheat.

Mulualem T Kassa1,2, Frank M You2, Tom G Fetch3, Pierre Fobert1, Andrew Sharpe1, Curtis J Pozniak4, James G Menzies2, Mark C Jordan2, Gavin Humphreys5, Tingting Zhu6, Ming-Cheng Luo6, Curt A McCartney2, Colin W Hiebert7.   

Abstract

KEY MESSAGE: New SNP markers that can be used for marker-assisted selection and map-based cloning saturate the chromosome region carrying SrCad , a wheat gene that confers resistance to Ug99 stem rust. Wheat stem rust, caused by Puccinia graminis f. sp. tritici, is a devastating disease of wheat worldwide. Development of cultivars with effective resistance has been the primary means to control this disease, but the appearance of new virulent strains such as Ug99 has rendered most wheat varieties vulnerable. The stem rust resistance gene SrCad located on chromosome arm 6DS has provided excellent resistance to various strains of Ug99 in field nurseries conducted in Njoro, Kenya since 2005. Three genetic populations were used to identify SNP markers closely linked to the SrCad locus. Of 220 SNP markers evaluated, 27 were found to be located within a 2 cM region surrounding SrCad. The diagnostic potential of these SNPs was evaluated in a diverse set of 50 wheat lines that were primarily of Canadian origin with known presence or absence of SrCad. Three SNP markers tightly linked proximally to SrCad and one SNP that co-segregated with SrCad were completely predictive of the presence or absence of SrCad. These markers also differentiated SrCad from Sr42 and SrTmp which are also located in the same region of chromosome arm 6DS. These markers should be useful in marker-assisted breeding to develop new wheat varieties containing SrCad-based resistance to Ug99 stem rust.

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Year:  2016        PMID: 27091129     DOI: 10.1007/s00122-016-2709-z

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  21 in total

1.  Inheritance of resistance to Ug99 stem rust in wheat cultivar Norin 40 and genetic mapping of Sr42.

Authors:  Habibollah Ghazvini; Colin W Hiebert; Taye Zegeye; Sixin Liu; Mridull Dilawari; Toi Tsilo; James A Anderson; Matthew N Rouse; Yue Jin; Tom Fetch
Journal:  Theor Appl Genet       Date:  2012-05-12       Impact factor: 5.699

2.  Resistance to stem rust Ug99 in six bread wheat cultivars maps to chromosome 6DS.

Authors:  Eric E Lopez-Vera; Sarah Nelson; Ravi P Singh; Bhoja R Basnet; Scott D Haley; Sridhar Bhavani; Julio Huerta-Espino; Beatriz G Xoconostle-Cazares; Roberto Ruiz-Medrano; Matthew N Rouse; Sukhwinder Singh
Journal:  Theor Appl Genet       Date:  2014-01       Impact factor: 5.699

3.  Development of a PCR marker for rapid identification of the Bt-10 gene for common bunt resistance in wheat.

Authors:  A Laroche; T Demeke; D A Gaudet; B Puchalski; M Frick; R McKenzie
Journal:  Genome       Date:  2000-04       Impact factor: 2.166

4.  Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation.

Authors:  Jizeng Jia; Shancen Zhao; Xiuying Kong; Yingrui Li; Guangyao Zhao; Weiming He; Rudi Appels; Matthias Pfeifer; Yong Tao; Xueyong Zhang; Ruilian Jing; Chi Zhang; Youzhi Ma; Lifeng Gao; Chuan Gao; Manuel Spannagl; Klaus F X Mayer; Dong Li; Shengkai Pan; Fengya Zheng; Qun Hu; Xianchun Xia; Jianwen Li; Qinsi Liang; Jie Chen; Thomas Wicker; Caiyun Gou; Hanhui Kuang; Genyun He; Yadan Luo; Beat Keller; Qiuju Xia; Peng Lu; Junyi Wang; Hongfeng Zou; Rongzhi Zhang; Junyang Xu; Jinlong Gao; Christopher Middleton; Zhiwu Quan; Guangming Liu; Jian Wang; Huanming Yang; Xu Liu; Zhonghu He; Long Mao; Jun Wang
Journal:  Nature       Date:  2013-03-24       Impact factor: 49.962

5.  The gene Sr33, an ortholog of barley Mla genes, encodes resistance to wheat stem rust race Ug99.

Authors:  Sambasivam Periyannan; John Moore; Michael Ayliffe; Urmil Bansal; Xiaojing Wang; Li Huang; Karin Deal; Mingcheng Luo; Xiuying Kong; Harbans Bariana; Rohit Mago; Robert McIntosh; Peter Dodds; Jan Dvorak; Evans Lagudah
Journal:  Science       Date:  2013-06-27       Impact factor: 47.728

6.  Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.).

Authors:  Alexandra M Allen; Gary L A Barker; Simon T Berry; Jane A Coghill; Rhian Gwilliam; Susan Kirby; Phil Robinson; Rachel C Brenchley; Rosalinda D'Amore; Neil McKenzie; Darren Waite; Anthony Hall; Michael Bevan; Neil Hall; Keith J Edwards
Journal:  Plant Biotechnol J       Date:  2011-06-01       Impact factor: 9.803

7.  A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes.

Authors:  Katherine W Jordan; Shichen Wang; Yanni Lun; Laura-Jayne Gardiner; Ron MacLachlan; Pierre Hucl; Krysta Wiebe; Debbie Wong; Kerrie L Forrest; Andrew G Sharpe; Christine Hd Sidebottom; Neil Hall; Christopher Toomajian; Timothy Close; Jorge Dubcovsky; Alina Akhunova; Luther Talbert; Urmil K Bansal; Harbans S Bariana; Matthew J Hayden; Curtis Pozniak; Jeffrey A Jeddeloh; Anthony Hall; Eduard Akhunov
Journal:  Genome Biol       Date:  2015-02-26       Impact factor: 13.583

8.  Identification of wheat gene Sr35 that confers resistance to Ug99 stem rust race group.

Authors:  Cyrille Saintenac; Wenjun Zhang; Eduard Akhunov; Jorge Dubcovsky; Andres Salcedo; Matthew N Rouse; Harold N Trick
Journal:  Science       Date:  2013-06-27       Impact factor: 47.728

9.  CerealsDB 2.0: an integrated resource for plant breeders and scientists.

Authors:  Paul A Wilkinson; Mark O Winfield; Gary L A Barker; Alexandra M Allen; Amanda Burridge; Jane A Coghill; Keith J Edwards
Journal:  BMC Bioinformatics       Date:  2012-09-03       Impact factor: 3.169

Review 10.  Disease Resistance Gene Analogs (RGAs) in Plants.

Authors:  Manoj Kumar Sekhwal; Pingchuan Li; Irene Lam; Xiue Wang; Sylvie Cloutier; Frank M You
Journal:  Int J Mol Sci       Date:  2015-08-14       Impact factor: 5.923

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  8 in total

1.  Interactions Between Lr67 or Lr34 and Other Leaf Rust Resistance Genes in Wheat (Triticum aestivum).

Authors:  Brent D McCallum; Colin W Hiebert
Journal:  Front Plant Sci       Date:  2022-05-20       Impact factor: 6.627

2.  Genetic mapping of Stb19, a new resistance gene to Zymoseptoria tritici in wheat.

Authors:  Nannan Yang; Megan C McDonald; Peter S Solomon; Andrew W Milgate
Journal:  Theor Appl Genet       Date:  2018-09-20       Impact factor: 5.699

3.  Dissection of the multigenic wheat stem rust resistance present in the Montenegrin spring wheat accession PI 362698.

Authors:  Jason D Zurn; Matthew N Rouse; Shiaoman Chao; Meriem Aoun; Godwin Macharia; Colin W Hiebert; Zacharias A Pretorius; J Michael Bonman; Maricelis Acevedo
Journal:  BMC Genomics       Date:  2018-01-22       Impact factor: 3.969

4.  Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16.

Authors:  Mulualem T Kassa; Frank M You; Colin W Hiebert; Curtis J Pozniak; Pierre R Fobert; Andrew G Sharpe; James G Menzies; D Gavin Humphreys; Nicole Rezac Harrison; John P Fellers; Brent D McCallum; Curt A McCartney
Journal:  BMC Plant Biol       Date:  2017-02-15       Impact factor: 4.215

5.  RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants.

Authors:  Pingchuan Li; Xiande Quan; Gaofeng Jia; Jin Xiao; Sylvie Cloutier; Frank M You
Journal:  BMC Genomics       Date:  2016-11-02       Impact factor: 3.969

6.  Fine mapping of the stem rust resistance gene SrTA10187.

Authors:  Andrew T Wiersma; Linda K Brown; Elizabeth I Brisco; Tiffany L Liu; Kevin L Childs; Jesse A Poland; Sunish K Sehgal; Eric L Olson
Journal:  Theor Appl Genet       Date:  2016-08-31       Impact factor: 5.699

7.  Genetics and mapping of seedling resistance to Ug99 stem rust in winter wheat cultivar Triumph 64 and differentiation of SrTmp, SrCad, and Sr42.

Authors:  Colin W Hiebert; Mulualem T Kassa; Curt A McCartney; Frank M You; Matthew N Rouse; Pierre Fobert; Tom G Fetch
Journal:  Theor Appl Genet       Date:  2016-08-09       Impact factor: 5.699

8.  Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat.

Authors:  Amira M I Mourad; Ahmed Sallam; Vikas Belamkar; Stephen Wegulo; Robert Bowden; Yue Jin; Ezzat Mahdy; Bahy Bakheit; Atif A El-Wafaa; Jesse Poland; Peter S Baenziger
Journal:  Front Plant Sci       Date:  2018-03-27       Impact factor: 5.753

  8 in total

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