| Literature DB >> 27087930 |
Abstract
The last decades have shown a surge in studies focusing on the interplay between fragmented habitats, genetic variation, and conservation. In the present study, we consider the case of a temperate pond-breeding anuran (the common toad Bufo bufo) inhabiting a naturally strongly fragmented habitat at the Northern fringe of the species' range: islands offshore the Norwegian coast. A total of 475 individuals from 19 populations (three mainland populations and 16 populations on seven adjacent islands) were genetically characterized using nine microsatellite markers. As expected for a highly fragmented habitat, genetic distances between populations were high (pairwise F st values ranging between 0.06 and 0.33), with however little differences between populations separated by ocean and populations separated by terrestrial habitat (mainland and on islands). Despite a distinct cline in genetic variation from mainland populations to peripheral islands, the study populations were characterized by overall high genetic variation, in line with effective population sizes derived from single-sample estimators which were on average about 20 individuals. Taken together, our results reinforce the notion that spatial and temporal scales of fragmentation need to be considered when studying the interplay between landscape fragmentation and genetic erosion.Entities:
Keywords: Anurans; Norway; genetic variation; island populations
Year: 2016 PMID: 27087930 PMCID: PMC4801968 DOI: 10.1002/ece3.1957
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1A common toad () pair in amplexus from the study area in Norway.
Figure 2Location of 16 study populations in Norway.
Descriptive population genetic parameters across 19 populations. Island populations are labelled with letters referring to the island of origin, and numbers based on field work. The last three populations are situated on the mainland
| Population |
| A/L | AR |
|
| HW disequilibria | ML | PA |
|---|---|---|---|---|---|---|---|---|
| A1 | 15 | 3.67 | 2.59 | 0.51 | 0.55 | 0 | 1 | 0 |
| A2 | 14 | 3.22 | 2.54 | 0.41 | 0.52 | 0 | 2 | 0 |
| A3 | 12 | 2.78 | 2.36 | 0.58 | 0.54 | 0 | 1 | 2 |
| B1 | 34 | 6.44 | 3.03 | 0.54 | 0.62 |
| 0 | 3 |
| B2 | 32 | 4.44 | 2.74 | 0.54 | 0.54 | 0 | 0 | 0 |
| B4 | 34 | 6.22 | 3.24 | 0.56 | 0.66 |
| 0 | 4 |
| B5 | 38 | 5.66 | 2.65 | 0.53 | 0.55 |
| 1 | 2 |
| M1 | 27 | 4.89 | 3.55 | 0.60 | 0.65 | 0 | 0 | 1 |
| M2 | 36 | 4.67 | 3.04 | 0.57 | 0.60 |
| 0 | 1 |
| S1 | 15 | 3.22 | 2.80 | 0.61 | 0.54 |
| 1 | 0 |
| S2 | 16 | 2.89 | 2.43 | 0.45 | 0.41 | 0 | 3 | 1 |
| S3 | 27 | 3.67 | 2.09 | 0.54 | 0.51 |
| 1 | 2 |
| S7 | 46 | 3.89 | 2.47 | 0.55 | 0.58 |
| 1 | 0 |
| T1 | 9 | 3.44 | 2.64 | 0.53 | 0.60 | 0 | 1 | 0 |
| T2 | 26 | 4.67 | 2.72 | 0.62 | 0.63 |
| 0 | 2 |
| T3 | 5 | 2.78 | 2.90 | 0.57 | 0.54 | 0 | 1 | 0 |
| FN | 24 | 8.00 | 2.52 | 0.59 | 0.70 |
| 0 | 6 |
| FV | 30 | 6.22 | 3.35 | 0.76 | 0.73 |
| 0 | 11 |
| FB | 35 | 6.78 | 3.44 | 0.64 | 0.69 |
| 0 | 5 |
n, number of samples genotyped; A/L, mean number of alleles per locus; AR, mean allelic richness; H o and H e, observed and expected mean heterozygosity; HW disequilibria, loci out of HWE; *denotes overall significant deviations from neutral expectation at a Bonferroni‐corrected P value (0.0056); ML, number of monomorphic loci; PA, number of private alleles.
Pairwise F st values between populations. Comparisons between populations on the same island are shown in boxes, comparisons between mainland populations are shown in a dashed box. The three mainland populations are below the horizontal line
Analysis of molecular variance (AMOVA) between island and mainland populations using four alternative groupings
| Structure tested | Sums of squares | Variance components | Percentage variation |
|---|---|---|---|
| All mainland vs. all island populations | |||
| Among groups | 42.4 | 0.18 | 2.4 |
| Among populations within groups | 373.6 | 0.51 | 15.7 |
| Within populations | 1913.9 | 2.70 | 81.9 |
| All islands as groups, all mainland populations as one single group | |||
| Among groups | 225.8 | 0.20 | 6.1 |
| Among populations within groups | 190.3 | 0.37 | 11.3 |
| Within populations | 1913.9 | 2.70 | 82.6 |
| All islands as groups, all mainland populations as individual groups | |||
| Among groups | 275.1 | 0.23 | 7.0 |
| Among populations within groups | 140.9 | 0.34 | 10.4 |
| Within populations | 1913.9 | 2.70 | 82.7 |
| Island populations only, islands as groups | |||
| Among groups | 176.3 | 0.30 | 6.5 |
| Among populations within groups | 147.9 | 0.36 | 11.4 |
| Within populations | 1514.0 | 2.60 | 82.1 |
Figure 3Most likely partition of genetic units (P = 0.84) represented by different colours as identified by the algorithm implemented in the software BAPS. For more details see text.
Single sample genetic measures of effective population size for 19 populations. For more details see text
| Population | Linkage disequilibrium method | Sibship method |
|---|---|---|
| A1 | 40.4 (5.1–∞) | 38 (16–223) |
| A2 | 39.2 (2.6–∞) | 17 (8–40) |
| A3 | 2780.6 (2.0–∞) | 26 (12–114) |
| B1 | 24.7 (14.2–54.8) | 36 (22–64) |
| B2 | 30.8 (12.0–∞) | 28 (18–48) |
| B4 | 20.1 (11.3–45.7) | 31 (18–55) |
| B5 | 23.7 (12.2–68.0) | 19 (11–38) |
| M1 | 29.4 (12.2–2113.3) | 27 (16–52) |
| M2 | 6.3 (15–∞) | 3 (1–31) |
| S1 | 234.4 (6.8–∞) | 25 (12–77) |
| S2 | 12.3 (1.6–∞) | 12 (6–30) |
| S3 | 24.5 (8.1–∞) | 21 (10–60) |
| S7 | 808.4 (27.3–∞) | 24 (14–42) |
| T1 | 15.1 (9.5–∞) | 48 (18–∞) |
| T2 | 101.9 (19.7–∞) | 13 (7–30) |
| T3 | 5.0 (1.7–∞) | 40 (6–∞) |
| FN | 91.0 (26.4–∞) | 48 (29–90) |
| FB | 65.7 (21.8–∞) | 34 (21–61) |
| FV | 89.6 (22.4–∞) | 18 (10–35) |