Literature DB >> 27086015

DNA enrichment approaches to identify unauthorized genetically modified organisms (GMOs).

Alfred J Arulandhu1, Jeroen P van Dijk1, David Dobnik2, Arne Holst-Jensen3, Jianxin Shi4, Jana Zel2, Esther J Kok5.   

Abstract

With the increased global production of different genetically modified (GM) plant varieties, chances increase that unauthorized GM organisms (UGMOs) may enter the food chain. At the same time, the detection of UGMOs is a challenging task because of the limited sequence information that will generally be available. PCR-based methods are available to detect and quantify known UGMOs in specific cases. If this approach is not feasible, DNA enrichment of the unknown adjacent sequences of known GMO elements is one way to detect the presence of UGMOs in a food or feed product. These enrichment approaches are also known as chromosome walking or gene walking (GW). In recent years, enrichment approaches have been coupled with next generation sequencing (NGS) analysis and implemented in, amongst others, the medical and microbiological fields. The present review will provide an overview of these approaches and an evaluation of their applicability in the identification of UGMOs in complex food or feed samples.

Entities:  

Keywords:  Enrichment approaches; GMOs; NGS; PCR; UGMOs

Mesh:

Substances:

Year:  2016        PMID: 27086015     DOI: 10.1007/s00216-016-9513-0

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  10 in total

1.  Molecular characterization of an unauthorized genetically modified Bacillus subtilis production strain identified in a vitamin B2 feed additive.

Authors:  Valentina Paracchini; Mauro Petrillo; Ralf Reiting; Alexandre Angers-Loustau; Daniela Wahler; Andrea Stolz; Birgit Schönig; Anastasia Matthies; Joachim Bendiek; Dominik M Meinel; Sven Pecoraro; Ulrich Busch; Alex Patak; Joachim Kreysa; Lutz Grohmann
Journal:  Food Chem       Date:  2017-03-09       Impact factor: 7.514

2.  Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO.

Authors:  Marie-Alice Fraiture; Assia Saltykova; Stefan Hoffman; Raf Winand; Dieter Deforce; Kevin Vanneste; Sigrid C J De Keersmaecker; Nancy H C Roosens
Journal:  Sci Rep       Date:  2018-05-21       Impact factor: 4.379

3.  Development and validation of an integrated DNA walking strategy to detect GMO expressing cry genes.

Authors:  Marie-Alice Fraiture; Julie Vandamme; Philippe Herman; Nancy H C Roosens
Journal:  BMC Biotechnol       Date:  2018-06-27       Impact factor: 2.563

Review 4.  Critical assessment of digital PCR for the detection and quantification of genetically modified organisms.

Authors:  Tigst Demeke; David Dobnik
Journal:  Anal Bioanal Chem       Date:  2018-03-24       Impact factor: 4.142

5.  A high-throughput and ultrasensitive identification methodology for unauthorized GMP component based on suspension array and logical calculator.

Authors:  Pengyu Zhu; Wei Fu; Shuang Wei; Xiao Liu; Chenguang Wang; Yun Lu; Ying Shang; Xiyang Wu; Yuping Wu; Shuifang Zhu
Journal:  Sci Rep       Date:  2019-05-13       Impact factor: 4.379

6.  Are Market GM Plants an Unrecognized Platform for Bioterrorism and Biocrime?

Authors:  Siguna Mueller
Journal:  Front Bioeng Biotechnol       Date:  2019-05-29

7.  On DNA Signatures, Their Dual-Use Potential for GMO Counterfeiting, and a Cyber-Based Security Solution.

Authors:  Siguna Mueller
Journal:  Front Bioeng Biotechnol       Date:  2019-08-07

Review 8.  Safety Assessment of Genetically Modified Feed: Is There Any Difference From Food?

Authors:  Paula A Giraldo; Hiroshi Shinozuka; German C Spangenberg; Noel O I Cogan; Kevin F Smith
Journal:  Front Plant Sci       Date:  2019-12-11       Impact factor: 5.753

Review 9.  High Throughput Sequencing for Detection of Foodborne Pathogens.

Authors:  Camilla Sekse; Arne Holst-Jensen; Ulrich Dobrindt; Gro S Johannessen; Weihua Li; Bjørn Spilsberg; Jianxin Shi
Journal:  Front Microbiol       Date:  2017-10-20       Impact factor: 5.640

10.  ALF: a strategy for identification of unauthorized GMOs in complex mixtures by a GW-NGS method and dedicated bioinformatics analysis.

Authors:  Alexandra Bogožalec Košir; Alfred J Arulandhu; Marleen M Voorhuijzen; Hongmei Xiao; Rico Hagelaar; Martijn Staats; Adalberto Costessi; Jana Žel; Esther J Kok; Jeroen P van Dijk
Journal:  Sci Rep       Date:  2017-10-26       Impact factor: 4.379

  10 in total

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