| Literature DB >> 27082205 |
Rong Bu1, Abdul K Siraj1, Khadija A S Al-Obaisi1, Shaham Beg1, Mohsen Al Hazmi1, Dahish Ajarim2, Asma Tulbah3, Fouad Al-Dayel4, Khawla S Al-Kuraya1.
Abstract
Ethnic differences of breast cancer genomics have prompted us to investigate the spectra of BRCA1 and BRCA2 mutations in different populations. The prevalence and effect of BRCA 1 and BRCA 2 mutations in Middle Eastern population is not fully explored. To characterize the prevalence of BRCA mutations in Middle Eastern breast cancer patients, BRCA mutation screening was performed in 818 unselected breast cancer patients using Capture and/or Sanger sequencing. 19 short tandem repeat (STR) markers were used for founder mutation analysis. In our study, nine different types of deleterious mutation were identified in 28 (3.4%) cases, 25 (89.3%) cases in BRCA 1 and 3 (10.7%) cases in BRCA 2. Seven recurrent mutations identified accounted for 92.9% (26/28) of all the mutant cases. Haplotype analysis was performed to confirm c.1140 dupG and c.4136_4137delCT mutations as novel putative founder mutation, accounting for 46.4% (13/28) of all BRCA mutant cases and 1.6% (13/818) of all the breast cancer cases, respectively. Moreover, BRCA 1 mutation was significantly associated with BRCA 1 protein expression loss (p = 0.0005). Our finding revealed that a substantial number of BRCA mutations were identified in clinically high risk breast cancer from Middle East region. Identification of the mutation spectrum, prevalence and founder effect in Middle Eastern population facilitates genetic counseling, risk assessment and development of cost-effective screening strategy.Entities:
Keywords: BRCA 1; BRCA 2; breast cancer; mutation
Mesh:
Substances:
Year: 2016 PMID: 27082205 PMCID: PMC5111783 DOI: 10.1002/ijc.30143
Source DB: PubMed Journal: Int J Cancer ISSN: 0020-7136 Impact factor: 7.396
Spectrum of BRCA deleterious mutations identified
| No. of Cases | BIC Database | UMD Database | |||||
|---|---|---|---|---|---|---|---|
| Gene | Exon | Mutation | First Set | Second Set | Entries | Ethnicity | Entries |
| BRCA1 | 11 | c.1140dupG; p.Lys381Glufs | 1 | 4 | 0 | NA | 1 |
| 11 | c.4065_4068delTCAA; p.Asn1355Lysfs | 2 | 0 | 133 | Worldwide | 59 | |
| 12 | c.4136_4137delCT; p.Ser1379X | 4 | 4 | 0 | NA | 1 | |
| 15 | c.4524G > A; p.Trp1508X | 1 | 1 | 23 | Europe, Caucasian/Native American, Ashkenazi | 0 | |
| 18 | IVS18 + 1G > C | 1 | 0 | 2 | W. Europe | 0 | |
| 20 | c.5251C > T; p.Arg1751X | 2 | 1 | 34 | Worldwide | 15 | |
| 24 | c.5530delC; p.Leu1844SerfsX11 | 1 | 3 | 0 | NA | 1 | |
| BRCA2 | 11 | c.6025C > T; p.Gln2009X | 1 | 0 | 3 | W. Europe, Ashkenazi | 1 |
| 13 | c.7007G > A; p.Arg2336His2 | 1 | 1 | 19 | Europe, Canadian | 0 | |
: Full Gene Screening Assay.
: Specific Mutation Screening Assay.
: European, Ashkenazi, African, Canadian, Irish, Latin‐American, Hispanic Mexican, Native American and Chinese.
: 1st and 3rd degree relatives;
: European, African, Indian, Greek, Asian, Latin‐American and Native American.
Correlation of BRCA‐1 mutation with clinic‐pathological parameters in breast cancer in full gene screening set
| Total | Positive | Negative | ||||
|---|---|---|---|---|---|---|
|
| % |
| % |
| % | |
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| 302 | 12 | 4.0 | 290 | 96.0 | |
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| ≤ 40 | 102 | 33.8 | 7 | 6.8 | 95 | 93.2 |
| > 40 | 200 | 66.2 | 5 | 2.5 | 195 | 97.5 |
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| No | 199 | 76.8 | 3 | 1.5 | 196 | 98.5 |
| Yes | 60 | 23.2 | 6 | 10.0 | 54 | 90.0 |
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| No | 234 | 80.7 | 4 | 1.7 | 230 | 98.3 |
| Yes | 56 | 19.3 | 8 | 14.3 | 48 | 85.7 |
Correlation of BRCA mutation with onset age in breast cancer
| BRCA 1 | BRCA 2 | |||
|---|---|---|---|---|
| Positive | Negative | Positive | Negative | |
| 818 | Mean ± SD | Mean ± SD | Mean ± SD | Mean ± SD |
| Age | 40.12 ± 11.52 | 46.68 ± 11.90 | 34.33 ± 7.37 | 46.52 ± 11.93 |
|
| 0.011 | 0.102 | ||
Correlation of BRCA‐1 mutation with clinicopathological parameters in breast cancer
| Total | Positive | Negative | |||||
|---|---|---|---|---|---|---|---|
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| % |
| % |
| % |
| |
|
| 818 | 25 | 3.1 | 793 | 96.9 | ||
|
| |||||||
| ≤ 40 | 266 | 32.5 | 15 | 5.6 | 251 | 94.4 | 0.0042 |
| > 40 | 552 | 67.5 | 10 | 1.8 | 542 | 98.2 | |
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| No | 562 | 79.7 | 5 | 0.9 | 557 | 99.1 | < 0.0001 |
| Yes | 143 | 20.3 | 14 | 9.8 | 129 | 90.2 | |
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| No | 683 | 84.7 | 9 | 1.3 | 674 | 98.7 | < 0.0001 |
| Yes | 123 | 15.3 | 15 | 12.2 | 108 | 87.8 | |
Prevalence of BRCA mutation according to the combination of different risk factors to carry BRCA mutation in breast cancer
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|---|---|---|---|---|---|---|---|
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| 818 | 28 | 3.5 | 790 | 96.5 | ||
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| Low Risk | 341 | 44.6 | 0 | 0 | 341 | 100.0 | <0.0001 |
| Yes | 423 | 55.4 | 26 | 6.2 | 397 | 93.8 | |
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| Low Risk | 341 | 85.5 | 0 | 0 | 341 | 100.0 | <0.0001 |
| Yes | 58 | 14.5 | 10 | 17.2 | 48 | 82.8 | |
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| Low Risk | 341 | 93.2 | 0 | 0 | 341 | 100.0 | <0.0001 |
| Yes | 25 | 6.8 | 9 | 36.0 | 16 | 64.0 | |
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| Low Risk | 341 | 87.4 | 0 | 0 | 341 | 100.0 | <0.0001 |
| Yes | 49 | 12.6 | 8 | 16.3 | 41 | 83.7 | |
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| Low Risk | 341 | 95.8 | 0 | 0 | 341 | 100.0 | <0.0001 |
| Yes | 16 | 4.2 | 6 | 40.0 | 9 | 60.0 | |