Literature DB >> 27080186

Evaluating TNA stability under simulated physiological conditions.

Michelle C Culbertson1, Kartik W Temburnikar1, Sujay P Sau2, Jen-Yu Liao2, Saikat Bala2, John C Chaput3.   

Abstract

Chemically modified oligonucleotides are routinely used as diagnostic and therapeutic agents due to their enhanced biological stability relative to natural DNA and RNA. Here, we examine the biological stability of α-l-threofuranosyl nucleic acid (TNA), an artificial genetic polymer composed of repeating units of α-l-threofuranosyl sugars linked by 2',3'-phosphodiester bonds. We show that TNA remains undigested after 7days of incubation in the presence of either 50% human serum or human liver microsomes and is stable against snake venom phosphordiesterase (a highly active 3' exonuclease). We further show that TNA will protect internal DNA residues from nuclease digestion and shield complementary RNA strands from RNA degrading enzymes. Together, these results demonstrate that TNA is an RNA analogue with high biological stability.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Biological stability; RNA analogue; Threose nucleic acid

Mesh:

Substances:

Year:  2016        PMID: 27080186     DOI: 10.1016/j.bmcl.2016.03.118

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  15 in total

1.  Activation of Innate Immune Responses by a CpG Oligonucleotide Sequence Composed Entirely of Threose Nucleic Acid.

Authors:  Margaret J Lange; Donald H Burke; John C Chaput
Journal:  Nucleic Acid Ther       Date:  2018-12-11       Impact factor: 5.486

2.  An RNA-cleaving threose nucleic acid enzyme capable of single point mutation discrimination.

Authors:  Yueyao Wang; Yao Wang; Dongfan Song; Xin Sun; Zhe Li; Jia-Yu Chen; Hanyang Yu
Journal:  Nat Chem       Date:  2021-12-16       Impact factor: 24.427

3.  A biologically stable DNAzyme that efficiently silences gene expression in cells.

Authors:  Yajun Wang; Kim Nguyen; Robert C Spitale; John C Chaput
Journal:  Nat Chem       Date:  2021-03-25       Impact factor: 24.274

4.  Structural basis for TNA synthesis by an engineered TNA polymerase.

Authors:  Nicholas Chim; Changhua Shi; Sujay P Sau; Ali Nikoomanzar; John C Chaput
Journal:  Nat Commun       Date:  2017-11-27       Impact factor: 14.919

5.  Synthesis and polymerase activity of a fluorescent cytidine TNA triphosphate analogue.

Authors:  Hui Mei; Changhua Shi; Randi M Jimenez; Yajun Wang; Miramar Kardouh; John C Chaput
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

6.  Evolution of a General RNA-Cleaving FANA Enzyme.

Authors:  Yajun Wang; Arlene K Ngor; Ali Nikoomanzar; John C Chaput
Journal:  Nat Commun       Date:  2018-11-29       Impact factor: 14.919

7.  Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.

Authors:  Lynnette N Jackson; Nicholas Chim; Changhua Shi; John C Chaput
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

8.  In vitro selection of an XNA aptamer capable of small-molecule recognition.

Authors:  Alexandra E Rangel; Zhe Chen; Tewoderos M Ayele; Jennifer M Heemstra
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

Review 9.  Modified nucleic acids: replication, evolution, and next-generation therapeutics.

Authors:  Karen Duffy; Sebastian Arangundy-Franklin; Philipp Holliger
Journal:  BMC Biol       Date:  2020-09-02       Impact factor: 7.431

10.  In Vitro Selection of an ATP-Binding TNA Aptamer.

Authors:  Li Zhang; John C Chaput
Journal:  Molecules       Date:  2020-09-13       Impact factor: 4.411

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