| Literature DB >> 27077844 |
Jiguang Du1, Xiyuan Sun2, Gang Jiang3.
Abstract
The interaction natures between Pu and different ligands in several plutonyl (VI) complexes are investigated by performing topological analyses of electron density. The geometrical structures in both gaseous and aqueous phases are obtained with B3LYP functional, and are generally in agreement with available theoretical and experimental results when combined with all-electron segmented all-electron relativistic contracted (SARC) basis set. The Pu- O y l bond orders show significant linear dependence on bond length and the charge of oxygen atoms in plutonyl moiety. The closed-shell interactions were identified for Pu-Ligand bonds in most complexes with quantum theory of atoms in molecules (QTAIM) analyses. Meanwhile, we found that some Pu-Ligand bonds, like Pu-OH(-), show weak covalent. The interactive nature of Pu-ligand bonds were revealed based on the interaction quantum atom (IQA) energy decomposition approach, and our results indicate that all Pu-Ligand interactions is dominated by the electrostatic attraction interaction as expected. Meanwhile it is also important to note that the quantum mechanical exchange-correlation contributions can not be ignored. By means of the non-covalent interaction (NCI) approach it has been found that some weak and repulsion interactions existed in plutonyl(VI) complexes, which can not be distinguished by QTAIM, can be successfully identified.Entities:
Keywords: NCI; QTAIM; chemical bondings; plutonyl complexes
Mesh:
Substances:
Year: 2016 PMID: 27077844 PMCID: PMC4848887 DOI: 10.3390/ijms17040414
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
The calculated bonding lengths (Å) of bare plutonyl (VI) and Plutonyl (VI) aquo species calculated at B3LYP/SARC-ZORA level of theory. The structural parameters calculated with B3LYP/SDD are given in the parentheses.
| Species | Gas | Solution | Expt | |||
|---|---|---|---|---|---|---|
| Pu–O | Pu–OH2 | Pu–O | Pu–OH2 | Pu–O | Pu–OH2 | |
| 1.711(1.673) | 1.716(1.723) | |||||
| PuO2(H2O | 1.751(1.703) | 2.451(2.467) | 1.763(1.716) | 2.402(2.449) | 1.74 | 2.41 |
| 1.748(1.714) | 1.771(1.785) | |||||
| PuO2(H2O | 1.808(1.766) | 2.539(2.591) | 1.832(1.779) | 2.497(2.597) | 1.81 | 2.47 |
Figure 1The relaxed geometry structures of Plutonyl (VI) complexes in gas phase optimized at B3LYP/SARC-ZORA level of theory.
The calculated bonding lengths (Å) of a series of Plutonyl (VI) complexes in gaseous and aqueous phases calculated at B3LYP/SARC-ZORA level of theory, the structural parameters obtained with B3LYP/SDD are given in the parentheses.
| Species | Gas | Solution | ||||
|---|---|---|---|---|---|---|
| Pu–O | Pu–L | Pu–OH2 | Pu–O | Pu–L | Pu–OH2 | |
| PuO2 | 1.811(1.773) | 2.222(2.225) | 1.806(1.766) | 2.201(2.209) | ||
| PuO2 | 1.772(1.742) | 2.749(2.743) | 1.775(1.737) | 2.706(2.692) | ||
| PuO2Cl2(H2O)2 | ||||||
| Cis- | 1.768(1.729) | 2.612(2.582) | 2.445(2.513) | 1.768(1.732) | 2.671(2.664) | 2.345(2.476) |
| Trans- | 1.767(1.729) | 2.623(2.591) | 2.417(2.481) | 1.768(1.728) | 2.670(2.640) | 2.349(2.421) |
| PuO2Cl2(H2O)3 | ||||||
| Cis- | 1.767(1.725) | 2.665(2.619) | 2.574(2.624) | 1.771(1.729) | 2.738(2.680) | 2.458(2.556) |
| Trans- | 1.767(1.722) | 2.717(2.661) | 2.490(2.558) | 1.771(1.728) | 2.757(2.703) | 2.441(2.523) |
| Expt | 1.75 | 2.70 | 2.49 | |||
| PuO2Cl(H2O | 1.763(1.723) | 2.617(2.566) | 2.493(2.542) | 1.768(1.719) | 2.722(2.634) | 2.424(2.486) |
| Expt | 1.75 | 2.75 | 2.43 | |||
| PuO2 | 1.770(1.732) | 2.907(2.904) | 1.776(1.736) | 2.853(2.862) | ||
| PuO2(OH | 1.859(1.798) | 2.281(2.288) | 1.836(1.791) | 2.243(2.272) | ||
| PuO2(OH)2(H2O)3 | 1.836(1.742) | 2.267(2.199) | 2.548(2.611) | 1.800(1.755) | 2.193(2.201) | 2.523(2.588) |
| PuO2(O)2(H2O)3 | 1.827(1.788) | 2.398(2.379) | 2.526(2.595) | 1.838(1.796) | 2.444(2.411) | 2.471(2.563) |
| PuO2(NO3 | 1.762(1.729) | 2.500(2.493) | 1.761(1.737) | 2.493(2.485) | ||
| PuO2(NO3)2(H2O)2 | 1.767(1.722) | 2.483(2.474) | 2.466(2.524) | 1.770(1.730) | 2.512(2.490) | 2.434(2.505) |
| Expt | 1.727 | 2.432 | 2.497 | |||
| PuO2(CO3 | 1.815(1.784) | 2.558(2.544) | 1.809(1.780) | 2.467(2.469) | ||
| PuO2(CO3)(H2O)3 | 1.814(1.773) | 2.620(2.607) | 2.514(2.581) | 1.825(1.781) | 2.678(2.673) | 2.456(2.536) |
The Natural population analyses (NPA) charge (q) and electronic configurations (EC) of Plutonium, Oxygen in plutonyl (O) and coordinating atoms in ligands (L) of studied Plutonyl (VI) complexes, the Wiberg bond index (WBI) of Pu=O and Pu–L chemical bonds.
| Species | WBI | WBI | ||||||
|---|---|---|---|---|---|---|---|---|
| (Pu) | (O | (L) | (Pu) | (O | (L) | (Pu=O) | (Pu–L) | |
| 2.04 | −0.52 | – | – | 2.05 | – | |||
| 2.50 | −0.25 | – | – | 2.24 | – | |||
| PuO2(H2O | 1.44 | −0.54 | −0.89 | 2.07 | (0.24) | |||
| PuO2(H2O | 1.44 | −0.26 | −0.85 | 2.29 | (0.39) | |||
| PuO2 | 1.39 | −0.46 | −0.62 | 2.10 | 0.65 | |||
| PuO2 | 0.68 | −0.39 | −0.48 | 2.18 | 0.86 | |||
| PuO2Cl2(H2O)2 | ||||||||
| Cis- | 0.86 | −0.35 | −0.28 | 2.23 | 1.14/(0.35) | |||
| Trans- | 0.86 | −0.35 | −0.27 | 2.22 | 1.14/(0.35) | |||
| PuO2Cl2(H2O)3 | ||||||||
| Cis- | 0.81 | −0.34 | −0.3 | 2.23 | 1.08/(0.29) | |||
| Trans- | 0.85 | −0.34 | −0.36 | 2.23 | 1.01/(0.31) | |||
| PuO2Cl(H2O | 1.09 | −0.32 | −0.18 | 2.25 | 1.26/(0.32) | |||
| PuO2 | 0.57 | −0.40 | −0.44 | 2.18 | 0.89 | |||
| PuO2(OH | 1.07 | −0.51 | −0.94 | 2.08 | 0.79 | |||
| PuO2(OH)2(H2O)3 | 1.13 | −0.37 | −0.86 | 2.21 | 0.95/(0.26) | |||
| PuO2(O)2(H2O)3 | 1.31 | −0.54 | −0.31 | 2.07 | 0.40/(0.24) | |||
| PuO2(NO3 | 1.13 | −0.32 | −0.42 | 2.22 | 0.41 | |||
| PuO2(NO3)2(H2O)2 | 1.15 | −0.32 | −0.44 | 2.24 | 0.43/(0.32) | |||
| PuO2(CO3 | 1.22 | −0.52 | −0.73 | 2.06 | 0.41 | |||
| PuO2(CO3)(H2O)3 | 1.40 | −0.55 | −0.68 | 2.06 | 0.25/(0.25) |
The Pu–OH2 bond orders are shown in parentheses.
Figure 2The linear correlation between WBI values and Pu–O bond lengths and NPA charge of O atoms in plutonyl moetiy.
Figure 3Electron density in the equatorial plane of studied plutonyl (VI) complexes, the BCPs are shown as the small blue sphere; the thin green lines represent the counter map of density; thin blue lines represent the interatomic paths that separate the atom electron density basins; the values of the density at the BCPs are also shown.
The topological parameters (a.u) for various studied complexes, the ligand is simply represented by L.
| Pu-L BCPs | |||||
|---|---|---|---|---|---|
| Species | |||||
| 0.334 | 0.263 | −0.322 | 2.181 | 1.90 | |
| 0.376 | 0.349 | −0.393 | 2.374 | 1.88 | |
| PuO2(H2O | 0.035 | 0.150 | 0.002 | 0.204 | 0.95 |
| PuO2(H2O | 0.049 | 0.209 | 4.8 × | 0.299 | 0.99 |
| PuO2 | 0.081 | 0.363 | −0.005 | 0.578 | 1.05 |
| PuO2 | 0.050 | 0.113 | −0.008 | 0.577 | 1.21 |
| PuO2Cl2(H2O)2 | |||||
| Cis- | 0.071 (0.045) | 0.156 (0.184) | −0.016 (3.6 × | 0.822 (0.287) | 1.30 |
| Trans- | 0.070 (0.047) | 0.143 (0.204) | −0.016 (6.2 × | 0.823 (0.290) | 1.31 |
| PuO2Cl2(H2O)3 | |||||
| Cis- | 0.066 (0.036) | 0.143 (0.131) | −0.014 (3.2 × | 0.742 (0.230) | 1.28 |
| Trans- | 0.061 (0.045) | 0.132 (0.181) | −0.012 (3.8 × | 0.673 (0.266) | 1.26 |
| PuO2Cl(H2O | 0.074 (0.045) | 0.156 (0.180) | -0.018 (2.1 × | 0.927 (0.281) | 1.31 |
| PuO2 | 0.044 | 0.082 | −0.007 | 0.589 | 1.25 |
| PuO2(OH | 0.082 | 0.283 | −0.011 | 0.666 | 1.14 |
| PuO2(OH)2(H2O)3 | 0.105 (0.036) | 0.360 (0.136) | −0.022 (3.5 × | 0.827 (0.213) | 1.20 |
| PuO2(O)2(H2O)3 | 0.061 (0.034) | 0.241 (0.156) | −0.004 (0.002) | 0.387 (0.211) | 1.06 |
| PuO2(NO3 | 0.051 | 0.185 | −0.002 | 0.324 | 1.04 |
| PuO2(NO3)2(H2O)2 | 0.054 (0.044) | 0.188 (0.176) | −0.003 (6.0 | 0.349 (0.247) | 1.05 |
| PuO2(CO3 | 0.050 | 0.158 | −0.002 | 0.370 | 1.06 |
| PuO2(CO3)(H2O)3 | 0.037 (0.037) | 0.143 (0.155) | 1.7 × | 0.228 (0.240) | 0.99 |
Decomposition of Pu–L interaction energies within the IQA framework for all relevant interactions in studied Plutonyl (VI) complexes.
| Complexes | Atoms | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| (a.u) | (a.u) | (a.u) | (a.u) | (kcal/mol) | (kcal/mol) | (kcal/mol) | |||
| PuO2(H2O | Pu–O(H2O) | −66.39 | −53.69 | 58.35 | 61.09 | −402.23 | −39.53 | −441.77 | 0.09 |
| PuO2 | Pu–F | −78.60 | −66.90 | 72.76 | 72.27 | −293.67 | −74.05 | −367.72 | 0.20 |
| PuO2 | Pu–Cl | −115.93 | −103.53 | 111.48 | 107.66 | −199.55 | −59.61 | −259.16 | 0.23 |
| PuO2 | Pu–Br | −220.93 | −201.90 | 216.87 | 205.69 | −176.96 | −56.48 | −233.43 | 0.24 |
| PuO2(OH | Pu–O(OH−) | −71.53 | −58.09 | 62.90 | 66.07 | −412.27 | −81.58 | −493.85 | 0.17 |
| PuO2(O)2(H2O)3 | Pu–O( | −63.33 | −56.27 | 60.51 | 58.90 | −123.62 | −46.44 | −170.06 | 0.27 |
| PuO2(NO3 | Pu–O( | −61.93 | −53.36 | 57.74 | 57.23 | −198.92 | −39.53 | −238.45 | 0.17 |
| Pu–N( | −37.68 | −39.63 | 42.89 | 34.82 | 247.87 | −1.88 | 245.98 | −0.008 | |
| PuO2(CO3 | Pu–O( | −64.34 | −51.98 | 56.21 | 59.50 | −384.04 | −38.91 | −422.94 | 0.09 |
| Pu–C( | −23.43 | −33.31 | 36.03 | 21.66 | 596.13 | −1.26 | 594.88 | −0.002 |
ELF values corresponding to (3,−1) BCPs associated with Plutonium center and and Ligand in Plutonyl (VI) complexes studied.
| Complexes | ||
|---|---|---|
| PuO2(H2O | 0.604 | 0.122 |
| PuO2 | 0.579 | 0.172 |
| PuO2 | 0.593 | 0.229 |
| PuO2 | 0.597 | 0.247 |
| PuO2(OH | 0.567 | 0.227 |
| PuO2(O)2(H2O)3 | 0.581 | 0.153 |
| PuO2(NO3 | 0.576 | 0.166 |
| PuO2(CO3 | 0.594 | 0.152 |
Figure 42D scatter plots of the RDG vs. sign() and corresponding 3D isosurfaces were generated with for PuO2(H2O and PuO2(H2O aquo complexes.
Figure 52D scatter plots of the RDG vs. sign() and corresponding 3D isosurfaces were generated with for Plutonyl (VI) complexes with Cl−, OH−, , and ligands.