Literature DB >> 27075189

Deprotonation and acidity characterization of biomass sugars: a first-principles study.

Gang Yang1, Chang Zhu2, Lijun Zhou2.   

Abstract

Deprotonation of biomass sugars is investigated by high-level electronic structure calculations, considering α- and β-anomers as well as all O and C sites. Structural alterations are generally focused on the deprotonated sites. Proton migration or/and ring opening occurs in 15 of 42 deprotonation processes and more frequently for D-fructofuranose than D-glucopyranose conformers. Other regular patterns of structural changes are observed; e.g., deprotonation at anomeric sites often cause larger structural perturbations, strong H-bonds of O(i)H(i)•••C(i) type are constructed by deprotonation at C sites. Then the enthalpy changes and Gibbs free energies for deprotonation at the various O/C sites are calculated by an economical and sufficiently testified composite method, which are consistent with previous results available. Deprotonation of anomeric groups is always preferred, while not the case for C sites. D-fructofuranose is more acidic than D-glucopyranose, whether for O or C sites. Although O sites are known to deprotonate, some C sites are found to be comparable, or even preferential. Whether for O or C sites, deprotonation is highly regioselective and this clearly indicates the potential utilization for selective conversion of biomass sugars.

Entities:  

Keywords:  Ab initio calculations; Anomeric effects; D-glucopyranose and D-fructofuranose; Deprotonation; Thermodynamic properties

Mesh:

Substances:

Year:  2016        PMID: 27075189     DOI: 10.1007/s00894-016-2972-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  21 in total

1.  Metalloenzyme-like catalyzed isomerizations of sugars by Lewis acid zeolites.

Authors:  Ricardo Bermejo-Deval; Rajeev S Assary; Eranda Nikolla; Manuel Moliner; Yuriy Román-Leshkov; Son-Jong Hwang; Arna Palsdottir; Dorothy Silverman; Raul F Lobo; Larry A Curtiss; Mark E Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

2.  B3LYP/6-311++G** study of alpha- and beta-D-glucopyranose and 1,5-anhydro-D-glucitol: 4C1 and 1C4 chairs, (3,O)B and B(3,O) boats, and skew-boat conformations.

Authors:  M Appell; G Strati; J L Willett; F A Momany
Journal:  Carbohydr Res       Date:  2004-02-25       Impact factor: 2.104

3.  Fluoro-substitution effects in deoxyfluoro-D-glucose derivatives: random conformational search and quantum chemical calculation.

Authors:  Jin-Ming Zhou; Jun-Hong Zhou; Hua-Bei Zhang; Xi-Cheng Dong; Min-Bo Chen
Journal:  Carbohydr Res       Date:  2006-07-12       Impact factor: 2.104

4.  Gaussian-4 theory using reduced order perturbation theory.

Authors:  Larry A Curtiss; Paul C Redfern; Krishnan Raghavachari
Journal:  J Chem Phys       Date:  2007-09-28       Impact factor: 3.488

5.  Ab initio molecular dynamics simulations of beta-D-glucose and beta-D-xylose degradation mechanisms in acidic aqueous solution.

Authors:  Xianghong Qian; Mark R Nimlos; Mark Davis; David K Johnson; Michael E Himmel
Journal:  Carbohydr Res       Date:  2005-10-17       Impact factor: 2.104

6.  Tin-containing zeolites are highly active catalysts for the isomerization of glucose in water.

Authors:  Manuel Moliner; Yuriy Román-Leshkov; Mark E Davis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

7.  Gas-phase acidity of D-glucose. A density functional theory study.

Authors:  Jean-Yves Salpin; Jeanine Tortajada
Journal:  J Mass Spectrom       Date:  2004-08       Impact factor: 1.982

8.  Determination of proton affinities and acidity constants of sugars.

Authors:  Shuting Feng; Christina Bagia; Giannis Mpourmpakis
Journal:  J Phys Chem A       Date:  2013-06-10       Impact factor: 2.781

9.  Conformational studies of diosgenyl 2-amino-2-deoxy-β-D-glucopyranosides at the PM3 and DFT levels of theory.

Authors:  Andrzej Nowacki; Henryk Myszka; Beata Liberek
Journal:  Carbohydr Res       Date:  2013-05-28       Impact factor: 2.104

10.  Theoretical study of the relative stability of rotational conformers of alpha and beta-D-glucopyranose in gas phase and aqueous solution.

Authors:  Jose C Corchado; María L Sánchez; Manuel A Aguilar
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

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