Literature DB >> 27075092

Cancer genomics: Hard-to-reach repairs.

Ekta Khurana1.   

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Year:  2016        PMID： 27075092     DOI： 10.1038/532181a

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  11 in total

1.  Nucleotide excision repair is impaired by binding of transcription factors to DNA.

Authors:  Radhakrishnan Sabarinathan; Loris Mularoni; Jordi Deu-Pons; Abel Gonzalez-Perez; Núria López-Bigas
Journal:  Nature       Date:  2016-04-14       Impact factor: 49.962

2.  Chromatin organization is a major influence on regional mutation rates in human cancer cells.

Authors:  Benjamin Schuster-Böckler; Ben Lehner
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

Review 3.  Role of non-coding sequence variants in cancer.

Authors:  Ekta Khurana; Yao Fu; Dimple Chakravarty; Francesca Demichelis; Mark A Rubin; Mark Gerstein
Journal:  Nat Rev Genet       Date:  2016-01-19       Impact factor: 53.242

4.  Integrative annotation of variants from 1092 humans: application to cancer genomics.

Authors:  Ekta Khurana; Yao Fu; Vincenza Colonna; Xinmeng Jasmine Mu; Hyun Min Kang; Tuuli Lappalainen; Andrea Sboner; Lucas Lochovsky; Jieming Chen; Arif Harmanci; Jishnu Das; Alexej Abyzov; Suganthi Balasubramanian; Kathryn Beal; Dimple Chakravarty; Daniel Challis; Yuan Chen; Declan Clarke; Laura Clarke; Fiona Cunningham; Uday S Evani; Paul Flicek; Robert Fragoza; Erik Garrison; Richard Gibbs; Zeynep H Gümüş; Javier Herrero; Naoki Kitabayashi; Yong Kong; Kasper Lage; Vaja Liluashvili; Steven M Lipkin; Daniel G MacArthur; Gabor Marth; Donna Muzny; Tune H Pers; Graham R S Ritchie; Jeffrey A Rosenfeld; Cristina Sisu; Xiaomu Wei; Michael Wilson; Yali Xue; Fuli Yu; Emmanouil T Dermitzakis; Haiyuan Yu; Mark A Rubin; Chris Tyler-Smith; Mark Gerstein
Journal:  Science       Date:  2013-10-04       Impact factor: 47.728

5.  TERT promoter mutations in familial and sporadic melanoma.

Authors:  Susanne Horn; Adina Figl; P Sivaramakrishna Rachakonda; Christine Fischer; Antje Sucker; Andreas Gast; Stephanie Kadel; Iris Moll; Eduardo Nagore; Kari Hemminki; Dirk Schadendorf; Rajiv Kumar
Journal:  Science       Date:  2013-01-24       Impact factor: 47.728

6.  Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes.

Authors:  Dilmi Perera; Rebecca C Poulos; Anushi Shah; Dominik Beck; John E Pimanda; Jason W H Wong
Journal:  Nature       Date:  2016-04-14       Impact factor: 49.962

7.  Differential DNA mismatch repair underlies mutation rate variation across the human genome.

Authors:  Fran Supek; Ben Lehner
Journal:  Nature       Date:  2015-02-23       Impact factor: 49.962

8.  Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution.

Authors:  Jinchuan Hu; Sheera Adar; Christopher P Selby; Jason D Lieb; Aziz Sancar
Journal:  Genes Dev       Date:  2015-05-01       Impact factor: 11.361

9.  Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair.

Authors:  Paz Polak; Michael S Lawrence; Eric Haugen; Nina Stoletzki; Petar Stojanov; Robert E Thurman; Levi A Garraway; Sergei Mirkin; Gad Getz; John A Stamatoyannopoulos; Shamil R Sunyaev
Journal:  Nat Biotechnol       Date:  2013-12-15       Impact factor: 54.908

10.  Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:  Michael S Lawrence; Petar Stojanov; Paz Polak; Gregory V Kryukov; Kristian Cibulskis; Andrey Sivachenko; Scott L Carter; Chip Stewart; Craig H Mermel; Steven A Roberts; Adam Kiezun; Peter S Hammerman; Aaron McKenna; Yotam Drier; Lihua Zou; Alex H Ramos; Trevor J Pugh; Nicolas Stransky; Elena Helman; Jaegil Kim; Carrie Sougnez; Lauren Ambrogio; Elizabeth Nickerson; Erica Shefler; Maria L Cortés; Daniel Auclair; Gordon Saksena; Douglas Voet; Michael Noble; Daniel DiCara; Pei Lin; Lee Lichtenstein; David I Heiman; Timothy Fennell; Marcin Imielinski; Bryan Hernandez; Eran Hodis; Sylvan Baca; Austin M Dulak; Jens Lohr; Dan-Avi Landau; Catherine J Wu; Jorge Melendez-Zajgla; Alfredo Hidalgo-Miranda; Amnon Koren; Steven A McCarroll; Jaume Mora; Brian Crompton; Robert Onofrio; Melissa Parkin; Wendy Winckler; Kristin Ardlie; Stacey B Gabriel; Charles W M Roberts; Jaclyn A Biegel; Kimberly Stegmaier; Adam J Bass; Levi A Garraway; Matthew Meyerson; Todd R Golub; Dmitry A Gordenin; Shamil Sunyaev; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2013-06-16       Impact factor: 49.962
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  2 in total

1.  Dynamic maps of UV damage formation and repair for the human genome.

Authors:  Jinchuan Hu; Ogun Adebali; Sheera Adar; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

2.  Non-coding genetic variation in cancer.

Authors:  Tawny N Cuykendall; Mark A Rubin; Ekta Khurana
Journal:  Curr Opin Syst Biol       Date:  2017-03-04
  2 in total

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