Literature DB >> 27070509

Statistical Mechanics of Allosteric Enzymes.

Tal Einav1, Linas Mazutis2, Rob Phillips3.   

Abstract

The concept of allostery in which macromolecules switch between two different conformations is a central theme in biological processes ranging from gene regulation to cell signaling to enzymology. Allosteric enzymes pervade metabolic processes, yet a simple and unified treatment of the effects of allostery in enzymes has been lacking. In this work, we take a step toward this goal by modeling allosteric enzymes and their interaction with two key molecular players-allosteric regulators and competitive inhibitors. We then apply this model to characterize existing data on enzyme activity, comment on how enzyme parameters (such as substrate binding affinity) can be experimentally tuned, and make novel predictions on how to control phenomena such as substrate inhibition.

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Year:  2016        PMID: 27070509      PMCID: PMC5452729          DOI: 10.1021/acs.jpcb.6b01911

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  57 in total

1.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

2.  A Further Note on the Kinetics of Enzyme Action.

Authors:  G E Briggs
Journal:  Biochem J       Date:  1925       Impact factor: 3.857

3.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

4.  New paradigm for allosteric regulation of Escherichia coli aspartate transcarbamoylase.

Authors:  Gregory M Cockrell; Yunan Zheng; Wenyue Guo; Alexis W Peterson; Jennifer K Truong; Evan R Kantrowitz
Journal:  Biochemistry       Date:  2013-10-31       Impact factor: 3.162

5.  Enzyme kinetics: the whole picture reveals hidden meanings.

Authors:  Maria F Pinto; Berta N Estevinho; Rosa Crespo; Fernando A Rocha; Ana M Damas; Pedro M Martins
Journal:  FEBS J       Date:  2015-04-13       Impact factor: 5.542

6.  Effects of adenosine triphosphate and magnesium ions on the fumarase reaction.

Authors:  P E Penner; L H Cohen
Journal:  J Biol Chem       Date:  1969-02-10       Impact factor: 5.157

7.  Crystallographic determination of symmetry of aspartate transcarbamylase.

Authors:  D C Wiley; W N Lipscomb
Journal:  Nature       Date:  1968-06-22       Impact factor: 49.962

8.  Responses of acetylcholinesterase from Torpedo marmorata to salts and curarizing drugs.

Authors:  J P Changeux
Journal:  Mol Pharmacol       Date:  1966-09       Impact factor: 4.436

9.  Allosteric motions in structures of yeast NAD+-specific isocitrate dehydrogenase.

Authors:  Alexander B Taylor; Gang Hu; P John Hart; Lee McAlister-Henn
Journal:  J Biol Chem       Date:  2008-02-06       Impact factor: 5.157

10.  Different Effects of Mg and Zn on the Two Sites for Alkylammonium Compounds in Pseudomonas aeruginosa Phosphorylcholine Phosphatase.

Authors:  Lisandro Horacio Otero; Paola Rita Beassoni; Cristhian Boetsch; Angela Teresita Lisa; Carlos Eduardo Domenech
Journal:  Enzyme Res       Date:  2011-05-14
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  3 in total

1.  Allostery and Kinetic Proofreading.

Authors:  Vahe Galstyan; Rob Phillips
Journal:  J Phys Chem B       Date:  2019-12-13       Impact factor: 2.991

2.  Self-consistent theory of transcriptional control in complex regulatory architectures.

Authors:  Jasper Landman; Robert C Brewster; Franz M Weinert; Rob Phillips; Willem K Kegel
Journal:  PLoS One       Date:  2017-07-07       Impact factor: 3.240

3.  Tuning Transcriptional Regulation through Signaling: A Predictive Theory of Allosteric Induction.

Authors:  Manuel Razo-Mejia; Stephanie L Barnes; Nathan M Belliveau; Griffin Chure; Tal Einav; Mitchell Lewis; Rob Phillips
Journal:  Cell Syst       Date:  2018-03-21       Impact factor: 10.304

  3 in total

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