| Literature DB >> 27069825 |
Kyeongah Nah1, Kenji Mizumoto2, Yuichiro Miyamatsu1, Yohei Yasuda3, Ryo Kinoshita1, Hiroshi Nishiura1.
Abstract
Background. An international spread of Zika virus (ZIKV) infection has attracted global attention. ZIKV is conveyed by a mosquito vector, Aedes species, which also acts as the vector species of dengue and chikungunya viruses. Methods. Arrival time of ZIKV importation (i.e., the time at which the first imported case was diagnosed) in each imported country was collected from publicly available data sources. Employing a survival analysis model in which the hazard is an inverse function of the effective distance as informed by the airline transportation network data, and using dengue and chikungunya virus transmission data, risks of importation and local transmission were estimated. Results. A total of 78 countries with imported case(s) have been identified, with the arrival time ranging from 1 to 44 weeks since the first ZIKV was identified in Brazil, 2015. Whereas the risk of importation was well explained by the airline transportation network data, the risk of local transmission appeared to be best captured by additionally accounting for the presence of dengue and chikungunya viruses. Discussion. The risk of importation may be high given continued global travel of mildly infected travelers but, considering that the public health concerns over ZIKV infection stems from microcephaly, it is more important to focus on the risk of local and widespread transmission that could involve pregnant women. The predicted risk of local transmission was frequently seen in tropical and subtropical countries with dengue or chikungunya epidemic experience.Entities:
Keywords: Epidemiology; Importation; Mathematical model; Network; Risk; Statistical estimation; Transmission; Zika virus
Year: 2016 PMID: 27069825 PMCID: PMC4824915 DOI: 10.7717/peerj.1904
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
The list of countries that experienced importation of Zika virus infection.
The earliest date at which an infected individual has likely to have entered the country is shown as the week counting from week 26, 1946. Extracting the dataset from the World Health Organization source, the week number of the report has been originally written and we used it as the week of importation. When the exact week was unavailable, the mid-point of the available time window was used as the week of importation. The first day of the year was set to be the first Sunday of January. One year was calculated to be exactly equal to 52 weeks in our analysis. Although three confirmed cases of ZIKV infection were reported in Chile on 2 February 2016, that data was ignored in the present study because the latest time was set at fourth week of 2016. We also did not count a case report from Easter Island, a Chilean island in the southeastern Pacific Ocean, because the island is geographically distant from other parts of Chile and has only one airport (World Health Organization, Western Pacific Region, 2016). In Australia, although one imported case is reported, there were no available sources of information to identify the date of confirmation. Instead, given that the corresponding article was received on 16 January 2013, we consider that the importation event took place in the previous year, 2012, and took the mid-point of the year as the week of importation (Kwong, Druce & Leder, 2013). In Zambia, a cross sectional study was conducted, but there was no available information to identify the date of importation or survey. Thus, the year of the acceptance of the article, 2015, was assumed as the year of importation (Babaniyi et al., 2015).
| Country | Year | Week | Weeks since Uganda | Country | Year | Week | Weeks since Uganda |
|---|---|---|---|---|---|---|---|
| Countries up to Brazil | Countries after Brazil | ||||||
| Uganda | 1947 | 26 | 0 | Vanuatu | 2015 | 17 | 3,527 |
| Tanzania | 1948 | 26 | 52 | Sweden | 2015 | 28 | 3,538 |
| Indonesia | 1951 | 26 | 208 | Fiji | 2015 | 33 | 3,543 |
| Malaysia | 1951 | 26 | 208 | Samoa | 2015 | 37 | 3,547 |
| India | 1952 | 26 | 260 | Colombia | 2015 | 42 | 3,552 |
| Philippines | 1953 | 26 | 312 | Suriname | 2015 | 45 | 3,555 |
| Egypt | 1953 | 26 | 312 | El Salvador | 2015 | 47 | 3,557 |
| Thailand | 1954 | 26 | 364 | Guatemala | 2015 | 47 | 3,557 |
| Vietnam | 1954 | 26 | 364 | Mexico | 2015 | 48 | 3,558 |
| Angola | 1960 | 22 | 672 | Venezuela | 2015 | 48 | 3,558 |
| Kenya | 1967 | 26 | 1,040 | Netherlands | 2015 | 48 | 3,558 |
| Ethiopia | 1967 | 26 | 1,040 | Panama | 2015 | 48 | 3,558 |
| Somalia | 1967 | 26 | 1,040 | Paraguay | 2015 | 48 | 3,558 |
| Gabon | 1967 | 26 | 1,040 | Honduras | 2015 | 51 | 3,561 |
| Nigeria | 1968 | 26 | 1,092 | Cape Verde | 2015 | 51 | 3,561 |
| Central African Republic | 1968 | 26 | 1,092 | Spain | 2015 | 52 | 3,562 |
| Senegal | 1968 | 26 | 1,092 | Puerto Rico | 2016 | 1 | 3,563 |
| Sierra Leone | 1972 | 26 | 1,300 | Martinique | 2016 | 2 | 3,564 |
| Pakistan | 1980 | 26 | 1,716 | French Guiana | 2016 | 2 | 3,564 |
| Cote d’Ivoire | 1980 | 26 | 1,716 | Finland | 2016 | 2 | 3,564 |
| Burkina Faso | 1981 | 26 | 1,768 | United Kingdom | 2016 | 3 | 3,565 |
| Micronesia | 2007 | 26 | 3,120 | Taiwan | 2016 | 3 | 3,565 |
| United States | 2008 | 26 | 3,172 | Bolivia | 2016 | 3 | 3,565 |
| Cameroon | 2010 | 26 | 3,276 | Ecuador | 2016 | 3 | 3,565 |
| Cambodia | 2010 | 34 | 3,284 | Haiti | 2016 | 3 | 3,565 |
| Australia | 2012 | 26 | 3,380 | Guadeloupe | 2016 | 3 | 3,565 |
| Canada | 2013 | 5 | 3,411 | Barbados | 2016 | 3 | 3,565 |
| Germany | 2013 | 26 | 3,432 | Guyana | 2016 | 3 | 3,565 |
| French Polynesia | 2013 | 46 | 3,452 | Argentina | 2016 | 4 | 3,566 |
| Japan | 2013 | 50 | 3,456 | Peru | 2016 | 4 | 3,566 |
| Norway | 2013 | 50 | 3,456 | Portugal | 2016 | 4 | 3,566 |
| Italy | 2014 | 1 | 3,459 | Austria | 2016 | 4 | 3,566 |
| New Caledonia | 2014 | 1 | 3,459 | Costa Rica | 2016 | 4 | 3,566 |
| Cook Islands | 2014 | 9 | 3,467 | Switzerland | 2016 | 4 | 3,566 |
| Solomon Islands | 2014 | 12 | 3,470 | Dominican Republic | 2016 | 4 | 3,566 |
| Zambia | 2014 | 26 | 3,484 | Jamaica | 2016 | 4 | 3,566 |
| Belgium | 2014 | 38 | 3,496 | Denmark | 2016 | 4 | 3,566 |
| Brazil | 2015 | 12 | 3,522 | Virgin Islands | 2016 | 4 | 3,566 |
| Nicaragua | 2016 | 4 | 3,566 | ||||
| Tonga | 2016 | 4 | 3,566 |
Figure 1Predicted risks of ZIKV infection.
(A–B) Distribution of estimated risks of importation and local transmission by country. The effective distance was used for (A), while the presence of dengue and chikungunya viruses was additionally considered for (B). (C–D) Receiver operator characteristic curves of predicted risks of importation and local transmission. (C) shows the evaluation results of the risk of importation that rested on the effective distance from Brazil, while (D) shows the risk of local transmission additionally accounted for dengue and chikungunya virus epidemic data.
Figure 2Global distribution of risks of importation and local transmission with Zika virus.
(A) The importation risk of ZIKV by week 92 is colored by intensity (0–20%, 20–40%, 40–60%, 60–80%). The origin country, Brazil, is colored in grey. Other additional countries colored in grey were excluded, because they experienced importation of ZIKV infection prior to the event in Brazil (week 12, 2015). (B) The local transmission risk of ZIKV infection by week 92 accounting for dengue and chikungunya epidemic data. The local transmission risk of ZIKV is colored by intensity (0–15%, 15–30%, 30–45%, 45–60%). The origin country, Brazil, is colored in grey. Other additional countries colored in grey were excluded, because they experienced importation of ZIKV infection prior to the event in Brazil (week 12, 2015).
Figure 3Countries at high risk of ZIKV infection.
(A–B) List of top 30 countries with the estimated highest risks. (A) shows the risk of importation, while (B) shows the risk of local transmission. The risks shown on horizontal axes represent our estimates by the end of 2016 (week 92). Bars filled with grey represent countries that have already experienced importation of ZIKV infected case(s) by 31 January 2016 (week 46).
Predictive performance of risk models of importation and local transmission.
| ID | Predicted risk (variables) | AUC | Cut-off (%) | Sensitivity (95% CI | Specificity (95% CI |
|---|---|---|---|---|---|
| NA | Importation | 0.84 (0.69,1.00) | 20.6 | 77.5 (64.6, 90.4) | 85.9 (80.3, 91.5) |
| 1 | Local transmission ( | 0.80 (0.55, 1.00) | 16.2 | 64.3 (46.5, 82.0) | 85.1 (79.6, 90.6) |
| 2 | Local transmission (Chikungunya) | 0.89 (0.62, 1.00) | 18.6 | 71.4 (54.7, 88.2) | 93.2 (89.3, 97.1) |
| 3 | Local transmission (Dengue) | 0.84 (0.54, 1.00) | 17.4 | 67.9 (50.6, 85.2) | 91.9 (87.7, 96.1) |
| 4 | Local transmission ( | 0.89 (0.61, 1.00) | 14.7 | 85.7 (72.8, 98.7) | 80.1 (74.0, 86.3) |
| 5 | Local transmission ( | 0.86 (0.55, 1.00) | 13.7 | 82.1 (68.0, 96.3) | 74.5 (67.8, 81.3) |
| 6 | Local transmission (Chikungunya & Dengue) | 0.90 (0.60, 1.00) | 9.71 | 96.4 (89.6, 100.0) | 67.7 (60.5, 74.9) |
| 7 | Local transmission ( | 0.76 (0.38, 1.00) | 51.2 | 89.3 (77.8, 100.0) | 70.8 (63.8, 77.8) |
Notes.
AUC, area under the curve. The confidence intervals were calculated using Mann–Whitney method (Gengsheng & Hotilovac, 2008).
CI, confidence interval.
Estimated parameters for describing the local transmission risk of Zika virus infection.
| Estimated values (95% CI) | Adjusted odds ratio (95% CI) | |
|---|---|---|
| Intercept | 2.06 (−4.23, −0.51) | NA |
| Chikungunya virus | 3.13 (1.19, 5.47) | 22.90 (3.30, 238.34) |
| Dengue virus | 2.04 (−0.02, 4.30) | 7.68 (0.98, 73.64) |
Notes.
NA, not applicable. Results from the best model that included Chikungunya and Dengue as explanatory variables are shown. Dependent nominal variable = local transmission. CI, confidence interval.
Agreement statistic kappa between two dichotomous variables.
| Combination of variables | Cohen’s kappa, an agreement statistic (95% CI |
|---|---|
| 0.442 (0.327, 0.556) | |
| 0.366 (0.235, 0.496) | |
| Chikungunya and Dengue | 0.523 (0.405, 0.642) |
Notes.
CI, confidence intervals.