| Literature DB >> 27069613 |
Jutta Reiker1, Benjamin Schulz2, Volker Wissemann1, Birgit Gemeinholzer1.
Abstract
For restoration purposes, nature conservation generally enforces the use of local seed material based on the "local-is-best" (LIB) approach. However, in some cases recommendations to refrain from this approach have been made. Here we test if a common widespread species with no obvious signs of local adaptation may be a candidate species for abandoning LIB during restoration. Using 10 microsatellite markers we compared population genetic patterns of the generalist species Daucus carota in indigenous and formerly restored sites (nonlocal seed provenances). Gene diversity overall ranged between H e = 0.67 and 0.86 and showed no significant differences between the two groups. Hierarchical AMOVA and principal component analysis revealed very high genetic population admixture and negligible differentiation between indigenous and restored sites (F CT = 0.002). Moreover, differentiation between groups was caused by only one outlier population, where inbreeding effects are presumed. We therefore conclude that the introduction of nonlocal seed provenances in the course of landscape restoration did not jeopardize regional species persistence by contributing to inbreeding or outbreeding depressions, or any measurable adverse population genetic effect. On the basis of these results, we see no obvious objections to the current practice to use the 10-fold cheaper, nonlocal seed material of D. carota for restoration projects.Entities:
Keywords: Daucus carota; local‐is‐best theory; microsatellite markers; nonlocal genotypes; population genetics; restoration
Year: 2015 PMID: 27069613 PMCID: PMC4813097 DOI: 10.1002/ece3.1817
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Overview of surveyed populations
| Population code | Location | Latitude | Longitude | Sample number | Date of restoration |
|---|---|---|---|---|---|
| I01 | Daubringen | 50.640255 | 8.739055 | 19 | – |
| I02 | Reiskirchen | 50.581666 | 8.829360 | 18 | – |
| I03 | Eichsfeld | 51.220721 | 10.358348 | 18 | – |
| I04 | Hainich | 51.036522 | 10.415168 | 13 | – |
| I05 | Niederkleen | 50.480773 | 8.616436 | 18 | – |
| I06 | Hungen | 50.467687 | 8.877661 | 17 | – |
| I07 | Geroda | 50.292924 | 9.920461 | 17 | – |
| I08 | Kirchvers | 50.690361 | 8.579271 | 17 | – |
| I09 | Lauterbach | 50.696151 | 9.359601 | 15 | – |
| R01 | Steinau | 50.323347 | 9.446011 | 16 | 1994 |
| R02 | Griedel | 50.447305 | 8.745246 | 17 | 1996 |
| R03 | Bad Nauheim | 50.392279 | 8.726213 | 19 | 1996 |
| R04 | Bad Nauheim | 50.402702 | 8.720849 | 18 | 1996 |
| R05 | Egelsbach | 49.962194 | 8.655639 | 20 | 1998 |
| R06 | Fernwald | 50.560872 | 8.755674 | 20 | 2003 |
| R07 | Herleshausen | 51.002248 | 10.130403 | 17 | 2003 |
| R08 | Eschbach | 50.218377 | 8.682396 | 16 | 2004 |
| R09 | Eschbach | 50.226271 | 8.701537 | 18 | 2004 |
| R10 | Herleshausen | 50.995496 | 10.153041 | 20 | 2004 |
R, Restored populations; I, indigenous populations.
Figure 1Map of sampled populations in the investigation area in Central Germany (Hesse, Thuringia, and Bavaria). Indigenous sites () are depicted in blue and restored sites () in red (see also Table 1). Source: Google Earth.
Microsatellite marker comparison of this investigation (JR) and by Cavagnaro et al. (2011) (C), with locus name, microsatellite motifs (SSR motifs), annealing temperature, size range in base pairs (bp), number of alleles, Neis unbiased gene diversity ( e), and the number of null alleles and rare alleles found in this investigation in one sample (in 1), or only in two samples (in 2). Loci that significantly deviated from the Hardy–Weinberg (HDW) expectations are shown in bold
| Locus | SSR motifs | Annealing temperature (°C) | Size range (bp) | Number of alleles |
| Null alleles | Rare alleles | HDW | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C | JR | C | JR | C | JR | In 1 | In 2 |
| df |
| ||||
| gssr3 | (AG)6tgga(GGAG)3 | 54 | 285–335 | 266–322 | 20 | 25 | 0.86 | 0.66 | 16 | 6 | 1 | 5.004 | 10 | 0.891ns |
| gssr4 | (TCTA)21 | 55 | 253–320 | 230–322 | 29 | 22 | 0.91 | 0.91 | 1 | 3 | 1 | 56.050 | 55 | 0.435ns |
| gssr6 | (TC)9a(CT)11 (CAGTAG)4 | 50 | 283–331 | 262–312 | 19 | 21 | 0.89 | 0.80 | 13 | 1 | 0 |
|
|
|
| gssr9 | (TG)13ata(TATG)10gatgg(ATGT)3 | 54 | 281–337 | 259–327 | 22 | 31 | 0.77 | 0.91 | 3 | 1 | 3 |
|
|
|
| gssr16 | (TG)9tacgc(ATGT)3 | 57 | 229–346 | 207–285 | 16 | 34 | 0.82 | 0.85 | 4 | 3 | 3 | 51.477 | 66 | 0.905ns |
| gssr35 | (GA)13 | 55 | 144–219 | 148–230 | 21 | 27 | 0.87 | 0.88 | 13 | 2 | 3 | 60.878 | 45 | 0.057ns |
| gssr65 | (TG)8 | 57 | 404–433 | 372–419 | 10 | 12 | 0.79 | 0.74 | 6 | 1 | 0 | 20.969 | 21 | 0.461ns |
| gssr85 | (TCTA)4tttatca(ATCT)4gtctgtcta(TCTG)3 | 54 | 219–294 | 196–316 | 14 | 25 | 0.84 | 0.90 | 1 | 1 | 0 | 40.500 | 45 | 0.663ns |
| gssr107 | (ATAC)8(ACAT)4 | 54 | no data | 219–299 | no data | 15 | no data | 0.53 | 0 | 0 | 1 | 16.650 | 10 | 0.082ns |
| gssr111 | (ATAC)3atccatc(CATA)9tat(CA)20 | 55 | 284–390 | 316–380 | 21 | 28 | 0.79 | 0.92 | 2 | 0 | 0 | 98.500 | 91 | 0.277ns |
HDW correlation coefficient; *** very significant P<0.001; ns = no significant.
Measures of within‐population diversity
| Population code |
|
|
|
|
|
|---|---|---|---|---|---|
| I01 | 10.2 | 5.7 | 1.9 | 0.77 | 0.83 |
| I02 | 11.1 | 7.0 | 2.1 | 0.75 | 0.86 |
| I03 | 11.9 | 8.3 | 2.2 | 0.75 | 0.89 |
| I04 | 10.5 | 6.5 | 2.0 | 0.81 | 0.86 |
| I05 | 11.2 | 7.7 | 2.2 | 0.77 | 0.88 |
| I06 | 10.5 | 5.8 | 1.9 | 0.74 | 0.81 |
| I07 | 8.1 | 5.4 | 1.8 | 0.79 | 0.81 |
| I08 | 11.7 | 7.7 | 2.2 | 0.78 | 0.87 |
| I09 | 9.7 | 5.9 | 1.9 | 0.79 | 0.81 |
| R01 | 10.5 | 5.6 | 2.0 | 0.77 | 0.82 |
| R02 | 9.2 | 5.1 | 1.8 | 0.74 | 0.80 |
| R03 | 9.7 | 5.2 | 1.9 | 0.72 | 0.80 |
| R04 | 6.6 | 3.5 | 1.4 | 0.61 | 0.69 |
| R05 | 12.4 | 8.1 | 2.2 | 0.83 | 0.87 |
| R06 | 11.0 | 6.8 | 2.0 | 0.74 | 0.85 |
| R07 | 11.6 | 6.5 | 2.1 | 0.76 | 0.85 |
| R08 | 11.1 | 6.5 | 2.0 | 0.76 | 0.84 |
| R09 | 11.4 | 6.9 | 2.1 | 0.79 | 0.87 |
| R10 | 11.4 | 5.6 | 2.0 | 0.74 | 0.81 |
| Average all | 10.5 | 6.3 | 1.99 | 0.76 | 0.83 |
| Average | 10.5 | 6.7 | 2.02 | 0.77 | 0.85 |
| Average | 10.5 | 6.0 | 1.95 | 0.75 | 0.82 |
| Average | 10.9 | 6.2 | 2.01 | 0.76 | 0.84 |
N a, number of different alleles; N e, number of effective alleles; H, Shannon's information index; H, observed heterozygosity; uHe, unbiased expected heterozygosity; R, restored populations; I, indigenous populations.
Summary of hierarchical AMOVA results for 19 Daucus carota populations grouped for indigenous (n = 9) and restored populations (n = 10)
| Source |
| % Total |
|
|
|---|---|---|---|---|
| Among groups | 0.010 | 0.2 | 0.049 |
|
| Among populations within groups | 0.174 | 4.1 | <0.001 |
|
| Within populations | 4.023 | 95.6 | <0.001 |
|
Figure 2Principal component analysis (PCA) depicting the genetic structure in populations of . Indigenous populations () are indicated in blue and restored populations () in red. Label positions represent the centroids of the respective population. Inertia ellipses indicate dispersion of samples in relation to mean coordinates and include approximately three fourth (76%) of all individuals for each population.