| Literature DB >> 27068509 |
Javier Barallobre-Barreiro1, Rahmi Oklu2, Marc Lynch1, Marika Fava3, Ferheen Baig1, Xiaoke Yin1, Temo Barwari1, David N Potier1, Hassan Albadawi4, Marjan Jahangiri5, Karen E Porter6, Michael T Watkins4, Sanjay Misra7, Julianne Stoughton4, Manuel Mayr8.
Abstract
AIMS: Extracellular matrix remodelling has been implicated in a number of vascular conditions, including venous hypertension and varicose veins. However, to date, no systematic analysis of matrix remodelling in human veins has been performed. METHODS ANDEntities:
Keywords: Extracellular matrix; Protease; Smooth Muscle; Venous
Mesh:
Substances:
Year: 2016 PMID: 27068509 PMCID: PMC4872879 DOI: 10.1093/cvr/cvw075
Source DB: PubMed Journal: Cardiovasc Res ISSN: 0008-6363 Impact factor: 10.787
ECM proteins with differential abundance between NSV and VSV based on in-solution digests
| Full name | Uniprot entry | NSV (Av ± SD) | VSV (Av ± SD) | Fold change | Extract | |
|---|---|---|---|---|---|---|
| Aggrecan | PGCA_HUMAN | 29.9 ± 21.2 | 1.8 ± 2.9 | 0.06 | 0.009 | GuHCl |
| Asporin | ASPN_HUMAN | 207.1 ± 132.3 | 41.0 ± 31.6 | 0.20 | 0.014 | GuHCl |
| Biglycan | PGS1_HUMAN | 1182.9 ± 205.2 | 442.9 ± 255.7 | 0.37 | <0.001 | GuHCl |
| Cartilage intermediate layer protein 1 | CILP1_HUMAN | 5.9 ± 2.0 | 2.1 ± 2.9 | 0.35 | 0.025 | GuHCl |
| Cathepsin D | CATD_HUMAN | 1.3 ± 1.3 | – | NA | NA | GuHCl |
| Chondroitin sulfate proteoglycan 4 | CSPG4_HUMAN | – | 1.2 ± 1.1 | NA | NA | NaCl |
| Clusterin | CLUS_HUMAN | 36.4 ± 11.5 | 11.3 ± 8.9 | 0.31 | 0.002 | GuHCl |
| Collagen alpha-1(I) | CO1A1_HUMAN | 790.5 ± 277.5 | 2017.0 ± 585.5 | 2.55 | 0.001 | GuHCl |
| Collagen alpha-1(III) | CO3A1_HUMAN | 13.7 ± 10.4 | 3.5 ± 3.1 | 0.25 | 0.043 | NaCl |
| Collagen alpha-2(I) | CO1A2_HUMAN | 457.9 ± 168.6 | 1129.7 ± 367.0 | 2.47 | 0.002 | GuHCl |
| Collagen alpha-2(IV) | CO4A2_HUMAN | 144.7 ± 51.4 | 84.9 ± 9.1 | 0.59 | 0.019 | GuHCl |
| Collagen triple helix repeat-containing protein 1 | CTHR1_HUMAN | 4.5 ± 4.5 | – | NA | NA | GuHCl |
| Decorin | PGS2_HUMAN | 1934.4 ± 590.4 | 1049.0 ± 259.7 | 0.54 | 0.007 | GuHCl |
| Dermatopontin | DERM_HUMAN | 425.7 ± 103.5 | 129.9 ± 54.9 | 0.31 | <0.001 | GuHCl |
| Fibromodulin | FMOD_HUMAN | 56.6 ± 32.2 | 12.6 ± 9.7 | 0.22 | 0.009 | GuHCl |
| Fibronectin | FINC_HUMAN | 103.1 ± 56.2 | 31.8 ± 14.9 | 0.31 | 0.013 | NaCl |
| Galectin-3-binding protein | LG3BP_HUMAN | 2.9 ± 1.3 | 0.6 ± 0.9 | 0.19 | 0.004 | GuHCl |
| Gelsolin | GELS_HUMAN | 97.1 ± 58.3 | 159.7 ± 23.7 | 1.65 | 0.035 | GuHCl |
| Laminin subunit beta-1 | LAMB1_HUMAN | 2.9 ± 0.9 | 4.9 ± 1.4 | 1.67 | 0.018 | GuHCl |
| Laminin subunit beta-2 | LAMB2_HUMAN | 105.9 ± 40.9 | 171.5 ± 45.6 | 1.62 | 0.026 | GuHCl |
| Laminin subunit gamma-1 | LAMC1_HUMAN | 80.9 ± 34.9 | 156.4 ± 31.5 | 1.93 | 0.003 | GuHCl |
| Latent-TGFβ-binding protein 2 | LTBP2_HUMAN | 4.8 ± 2.0 | 1.5 ± 1.1 | 0.32 | 0.007 | GuHCl |
| Lumican | LUM_HUMAN | 1577.2 ± 436.8 | 979.7 ± 411.1 | 0.62 | 0.035 | GuHCl |
| Metalloproteinase inhibitor 3 | TIMP3_HUMAN | 3.3 ± 2.4 | 0.1 ± 0.4 | 0.05 | 0.010 | GuHCl |
| Mimecan | MIME_HUMAN | 633.1 ± 89.0 | 293.2 ± 78.2 | 0.46 | <0.001 | GuHCl |
| Mimecan | MIME_HUMAN | 12.1 ± 7.9 | 4.6 ± 1.7 | 0.38 | 0.047 | NaCl |
| Nidogen-2 | NID2_HUMAN | 29.7 ± 14.7 | 14.3 ± 3.2 | 0.48 | 0.031 | GuHCl |
| Prolargin | PRELP_HUMAN | 1203.6 ± 293.0 | 484.1 ± 261.4 | 0.40 | 0.001 | GuHCl |
| Prosaposin | SAP_HUMAN | 3.5 ± 1.1 | 2.0 ± 1.0 | 0.58 | 0.040 | GuHCl |
| Protein S100-A10 | S10AA_HUMAN | 18.3 ± 5.9 | 8.2 ± 6.2 | 0.45 | 0.017 | GuHCl |
| Serine protease HTRA1 | HTRA1_HUMAN | 29.6 ± 13.6 | 4.0 ± 5.3 | 0.14 | 0.002 | GuHCl |
| Serum amyloid P-component | SAMP_HUMAN | 107.2 ± 41.8 | 10.7 ± 12.5 | 0.10 | <0.001 | GuHCl |
| Target of Nesh-SH3 | TARSH_HUMAN | 155.6 ± 86.9 | 72.7 ± 27.1 | 0.47 | 0.050 | GuHCl |
| TGFß-induced protein ig-h3 | BGH3_HUMAN | 15.2 ± 4.0 | 79.6 ± 39.4 | 5.25 | 0.003 | NaCl |
| Thrombospondin-1 | TSP1_HUMAN | 16.7 ± 10.4 | 36.1 ± 8.1 | 2.17 | 0.005 | NaCl |
| Tubulointerstitial nephritis antigen-like | TINAL_HUMAN | 122.0 ± 35.5 | 58.8 ± 21.6 | 0.48 | 0.004 | GuHCl |
| Vitronectin | VTNC_HUMAN | 23.3 ± 5.5 | 4.4 ± 3.6 | 0.19 | <0.001 | GuHCl |
| von Willebrand factor A domain-containing protein 1 | VWA1_HUMAN | 13.9 ± 9.6 | 4.6 ± 2.9 | 0.33 | 0.048 | GuHCl |
Average ± standard deviation (Av ± SD) based on total ion current (TIC × 10 to the power of 6).
P-values were derived from unpaired Student's t-tests with unequal variance (Note that every time protein expression in the majority of samples from 1 of the 2 groups compared was undetectable, the t-test was not performed; hyphens (-) denote these proteins without detection in one of the groups). NA denotes ‘not applicable’.