Literature DB >> 27066748

Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation.

Jeong Joo Kim1, Robin Lorenz2, Stefan T Arold3, Albert S Reger4, Banumathi Sankaran5, Darren E Casteel6, Friedrich W Herberg2, Choel Kim7.   

Abstract

Cyclic guanosine monophosphate (cGMP)-dependent protein kinase (PKG) is a key regulator of smooth muscle and vascular tone and represents an important drug target for treating hypertensive diseases and erectile dysfunction. Despite its importance, its activation mechanism is not fully understood. To understand the activation mechanism, we determined a 2.5 Å crystal structure of the PKG I regulatory (R) domain bound with cGMP, which represents the activated state. Although we used a monomeric domain for crystallization, the structure reveals that two R domains form a symmetric dimer where the cGMP bound at high-affinity pockets provide critical dimeric contacts. Small-angle X-ray scattering and mutagenesis support this dimer model, suggesting that the dimer interface modulates kinase activation. Finally, structural comparison with the homologous cyclic AMP-dependent protein kinase reveals that PKG is drastically different from protein kinase A in its active conformation, suggesting a novel activation mechanism for PKG.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  NO-cGMP signaling; allosteric activation; cGMP-dependent protein kinase; crystal structure; cyclic nucleotide-binding domain; second messengers; small-angle X-ray scattering

Mesh:

Substances:

Year:  2016        PMID: 27066748      PMCID: PMC4856591          DOI: 10.1016/j.str.2016.03.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  37 in total

1.  Dimerization of cGMP-dependent protein kinase Ibeta is mediated by an extensive amino-terminal leucine zipper motif, and dimerization modulates enzyme function.

Authors:  Robyn Richie-Jannetta; Sharron H Francis; Jackie D Corbin
Journal:  J Biol Chem       Date:  2003-08-21       Impact factor: 5.157

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

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Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  The amino terminus of cGMP-dependent protein kinase Iβ increases the dynamics of the protein's cGMP-binding pockets.

Authors:  Jun H Lee; Sheng Li; Tong Liu; Simon Hsu; Choel Kim; Virgil L Woods; Darren E Casteel
Journal:  Int J Mass Spectrom       Date:  2011-04-30       Impact factor: 1.986

4.  FoXS: a web server for rapid computation and fitting of SAXS profiles.

Authors:  Dina Schneidman-Duhovny; Michal Hammel; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2010-05-27       Impact factor: 16.971

5.  Structural basis for cyclic-nucleotide selectivity and cGMP-selective activation of PKG I.

Authors:  Gilbert Y Huang; Jeong Joo Kim; Albert S Reger; Robin Lorenz; Eui-Whan Moon; Chi Zhao; Darren E Casteel; Daniela Bertinetti; Bryan Vanschouwen; Rajeevan Selvaratnam; James W Pflugrath; Banumathi Sankaran; Giuseppe Melacini; Friedrich W Herberg; Choel Kim
Journal:  Structure       Date:  2013-11-14       Impact factor: 5.006

6.  Realizing the allosteric potential of the tetrameric protein kinase A RIα holoenzyme.

Authors:  Angela J Boettcher; Jian Wu; Choel Kim; Jie Yang; Jessica Bruystens; Nikki Cheung; Juniper K Pennypacker; Donald A Blumenthal; Alexandr P Kornev; Susan S Taylor
Journal:  Structure       Date:  2011-02-09       Impact factor: 5.006

7.  Co-crystal structures of PKG Iβ (92-227) with cGMP and cAMP reveal the molecular details of cyclic-nucleotide binding.

Authors:  Jeong Joo Kim; Darren E Casteel; Gilbert Huang; Taek Hun Kwon; Ronnie Kuo Ren; Peter Zwart; Jeffrey J Headd; Nicholas Gene Brown; Dar-Chone Chow; Timothy Palzkill; Choel Kim
Journal:  PLoS One       Date:  2011-04-19       Impact factor: 3.240

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

9.  Crystal structures of the carboxyl cGMP binding domain of the Plasmodium falciparum cGMP-dependent protein kinase reveal a novel capping triad crucial for merozoite egress.

Authors:  Jeong Joo Kim; Christian Flueck; Eugen Franz; Eduardo Sanabria-Figueroa; Eloise Thompson; Robin Lorenz; Daniela Bertinetti; David A Baker; Friedrich W Herberg; Choel Kim
Journal:  PLoS Pathog       Date:  2015-02-03       Impact factor: 6.823

10.  Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: insights for cGMP-dependent protein kinase agonist design.

Authors:  Gilbert Y Huang; Oksana O Gerlits; Matthew P Blakeley; Banumathi Sankaran; Andrey Y Kovalevsky; Choel Kim
Journal:  Biochemistry       Date:  2014-10-22       Impact factor: 3.162

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  22 in total

1.  The activity of cGMP-dependent protein kinase Iα is not directly regulated by oxidation-induced disulfide formation at cysteine 43.

Authors:  Hema Kalyanaraman; Shunhui Zhuang; Renate B Pilz; Darren E Casteel
Journal:  J Biol Chem       Date:  2017-03-30       Impact factor: 5.157

2.  An N-terminally truncated form of cyclic GMP-dependent protein kinase Iα (PKG Iα) is monomeric and autoinhibited and provides a model for activation.

Authors:  Thomas M Moon; Jessica L Sheehe; Praveena Nukareddy; Lydia W Nausch; Jessica Wohlfahrt; Dwight E Matthews; Donald K Blumenthal; Wolfgang R Dostmann
Journal:  J Biol Chem       Date:  2018-03-30       Impact factor: 5.157

3.  A substitution in cGMP-dependent protein kinase 1 associated with aortic disease induces an active conformation in the absence of cGMP.

Authors:  Matthew H Chan; Sahar Aminzai; Tingfei Hu; Amatya Taran; Sheng Li; Choel Kim; Renate B Pilz; Darren E Casteel
Journal:  J Biol Chem       Date:  2020-06-05       Impact factor: 5.157

4.  Dual Activities of Plant cGMP-Dependent Protein Kinase and Its Roles in Gibberellin Signaling and Salt Stress.

Authors:  Qingwen Shen; Xinqiao Zhan; Pei Yang; Jing Li; Jie Chen; Bing Tang; Xuemin Wang; Yueyun Hong
Journal:  Plant Cell       Date:  2019-10-01       Impact factor: 11.277

5.  Mechanism of allosteric inhibition in the Plasmodium falciparum cGMP-dependent protein kinase.

Authors:  Jung Ah Byun; Katherine Van; Jinfeng Huang; Philipp Henning; Eugen Franz; Madoka Akimoto; Friedrich W Herberg; Choel Kim; Giuseppe Melacini
Journal:  J Biol Chem       Date:  2020-04-21       Impact factor: 5.157

6.  Mutations of PKA cyclic nucleotide-binding domains reveal novel aspects of cyclic nucleotide selectivity.

Authors:  Robin Lorenz; Eui-Whan Moon; Jeong Joo Kim; Sven H Schmidt; Banumathi Sankaran; Ioannis V Pavlidis; Choel Kim; Friedrich W Herberg
Journal:  Biochem J       Date:  2017-07-06       Impact factor: 3.857

7.  Structural Basis of Analog Specificity in PKG I and II.

Authors:  James C Campbell; Philipp Henning; Eugen Franz; Banumathi Sankaran; Friedrich W Herberg; Choel Kim
Journal:  ACS Chem Biol       Date:  2017-08-22       Impact factor: 5.100

8.  Chemosensory signal transduction in Caenorhabditis elegans.

Authors:  Denise M Ferkey; Piali Sengupta; Noelle D L'Etoile
Journal:  Genetics       Date:  2021-03-31       Impact factor: 4.562

9.  Switching Cyclic Nucleotide-Selective Activation of Cyclic Adenosine Monophosphate-Dependent Protein Kinase Holoenzyme Reveals Distinct Roles of Tandem Cyclic Nucleotide-Binding Domains.

Authors:  Daniel He; Robin Lorenz; Choel Kim; Friedrich W Herberg; Chinten James Lim
Journal:  ACS Chem Biol       Date:  2017-11-21       Impact factor: 5.100

10.  Structural basis for selective inhibition of human PKG Iα by the balanol-like compound N46.

Authors:  Liying Qin; Banumathi Sankaran; Sahar Aminzai; Darren E Casteel; Choel Kim
Journal:  J Biol Chem       Date:  2018-05-16       Impact factor: 5.157

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