Literature DB >> 27061973

A Set of Efficient nD NMR Protocols for Resonance Assignments of Intrinsically Disordered Proteins.

Christoph Wiedemann1, Peter Bellstedt2, Sabine Häfner3, Christian Herbst4, Frank Bordusa1, Matthias Görlach3, Oliver Ohlenschläger3, Ramadurai Ramachandran5.   

Abstract

The RF pulse scheme RN[N-CA HEHAHA]NH, which provides a convenient approach to the acquisition of different multidimensional chemical shift correlation NMR spectra leading to backbone resonance assignments, including those of the proline residues of intrinsically disordered proteins (IDPs), is experimentally demonstrated. Depending on the type of correlation data required, the method involves the generation of in-phase ((15) N)(x) magnetisation via different magnetisation transfer pathways such as H→N→CO→N, HA→CA→CO→N, H→N→CA→N and H→CA→N, the subsequent application of (15) N-(13) C(α) heteronuclear Hartmann-Hahn mixing over a period of ≈100 ms, chemical-shift labelling of relevant nuclei before and after the heteronuclear mixing step and amide proton detection in the acquisition dimension. It makes use of the favourable relaxation properties of IDPs and the presence of (1) JCαN and (2) JCαN couplings to achieve efficient correlation of the backbone resonances of each amino acid residue "i" with the backbone amide resonances of residues "i-1" and "i+1". It can be implemented in a straightforward way through simple modifications of the RF pulse schemes commonly employed in protein NMR studies. The efficacy of the approach is demonstrated using a uniformly ((15) N,(13) C) labelled sample of α-synuclein. The different possibilities for obtaining the amino-acid-type information, simultaneously with the connectivity data between the backbone resonances of sequentially neighbouring residues, have also been outlined.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Keywords:  non-uniform sampling; nuclear magnetic resonance; proteins; resonance assignment; sequential acquisition

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Year:  2016        PMID: 27061973     DOI: 10.1002/cphc.201600155

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  1 in total

1.  Heme interaction of the intrinsically disordered N-terminal peptide segment of human cystathionine-β-synthase.

Authors:  Amit Kumar; Amelie Wißbrock; Nishit Goradia; Peter Bellstedt; Ramadurai Ramachandran; Diana Imhof; Oliver Ohlenschläger
Journal:  Sci Rep       Date:  2018-02-06       Impact factor: 4.379

  1 in total

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