Literature DB >> 27059864

Metagenomic analysis of lacustrine viral diversity along a latitudinal transect of the Antarctic Peninsula.

Daniel Aguirre de Cárcer1, Alberto López-Bueno1, Juan M Alonso-Lobo1, Antonio Quesada2, Antonio Alcamí3.   

Abstract

Environmental viruses constitute the most abundant biological entities on earth, and harbor an enormous genetic diversity. While their strong influence on the ecosystem is widely acknowledged, current knowledge about their diversity and distribution remains limited. Here we present the metagenomic study of viral communities from freshwater bodies located along a transect of the Antarctic Peninsula. These ecosystems were chosen on the basis of environmental and biogeographical variation. The results obtained indicate that the virus assemblages were diverse, and that the larger fraction represented viruses with no close relatives in the databases. Comparisons to existing metaviromes showed that the communities studied were dissimilar to other freshwater viromes including those from the Arctic. Finally, we observed no indication of there being a reduction in either viral richness or diversity estimates with increasing latitude along the studied transect, further adding to the controversy regarding the possible existence of latitudinal gradients of diversity in the microbial world. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Antarctic Peninsula; lacustrine environments; latitudinal gradient; metagenomics; ssDNA viruses; viruses

Mesh:

Year:  2016        PMID: 27059864     DOI: 10.1093/femsec/fiw074

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  10 in total

1.  Metagenomic Characterization of the Viral Community of the South Scotia Ridge.

Authors:  Qingwei Yang; Chen Gao; Yong Jiang; Min Wang; Xinhao Zhou; Hongbing Shao; Zheng Gong; Andrew McMinn
Journal:  Viruses       Date:  2019-01-24       Impact factor: 5.048

Review 2.  Viruses of Polar Aquatic Environments.

Authors:  Sheree Yau; Mansha Seth-Pasricha
Journal:  Viruses       Date:  2019-02-22       Impact factor: 5.048

3.  Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour.

Authors:  Christine N Palermo; Roberta R Fulthorpe; Rosemary Saati; Steven M Short
Journal:  Viruses       Date:  2019-08-28       Impact factor: 5.048

4.  Extreme Viral Partitioning in a Marine-Derived High Arctic Lake.

Authors:  Myriam Labbé; Catherine Girard; Warwick F Vincent; Alexander I Culley
Journal:  mSphere       Date:  2020-05-13       Impact factor: 4.389

5.  Single-Stranded DNA Viruses in Antarctic Cryoconite Holes.

Authors:  Pacifica Sommers; Rafaela S Fontenele; Tayele Kringen; Simona Kraberger; Dorota L Porazinska; John L Darcy; Steven K Schmidt; Arvind Varsani
Journal:  Viruses       Date:  2019-11-04       Impact factor: 5.048

6.  Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico.

Authors:  Ricardo I Alcalá-Briseño; Kena Casarrubias-Castillo; Diana López-Ley; Karen A Garrett; Laura Silva-Rosales
Journal:  mSystems       Date:  2020-01-14       Impact factor: 6.496

7.  Identification and Distribution of Novel Cressdnaviruses and Circular molecules in Four Penguin Species in South Georgia and the Antarctic Peninsula.

Authors:  Hila Levy; Rafaela S Fontenele; Ciara Harding; Crystal Suazo; Simona Kraberger; Kara Schmidlin; Anni Djurhuus; Caitlin E Black; Tom Hart; Adrian L Smith; Arvind Varsani
Journal:  Viruses       Date:  2020-09-16       Impact factor: 5.048

8.  Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges, Baikalospongia bacillifera.

Authors:  Tatyana V Butina; Ivan S Petrushin; Igor V Khanaev; Yurij S Bukin
Journal:  Microorganisms       Date:  2022-02-21

9.  Genetic and functional diversity of double-stranded DNA viruses in a tropical monsoonal estuary, India.

Authors:  Vijayan Jasna; Ammini Parvathi; Abhinandita Dash
Journal:  Sci Rep       Date:  2018-10-30       Impact factor: 4.379

Review 10.  Viruses associated with Antarctic wildlife: From serology based detection to identification of genomes using high throughput sequencing.

Authors:  Zoe E Smeele; David G Ainley; Arvind Varsani
Journal:  Virus Res       Date:  2017-10-27       Impact factor: 3.303

  10 in total

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