Literature DB >> 27058110

DNA Equation of State: In Vitro vs In Viro.

Rudolf Podgornik1,2,3, M Alphan Aksoyoglu1, Selcuk Yasar1, Daniel Svenšek3, V Adrian Parsegian1.   

Abstract

We formulate a continuum approach to the equation of state (density dependence of osmotic pressure) of bulk DNA and encapsidated DNA, as well as review the phase diagram of DNA in the regime of densities relevant for DNA packing in bacteriophages. We derive the first integral of the equilibrium equations that connects the behavior of DNA in the bulk and in nanoscale enclosures, and we delineate the changes wrought upon the mesophase equilibria of encapsidated DNA. We show how multiphase equilibria and complicated spatial distribution of DNA density and orientation can emerge due to the curvature contribution to the DNA osmotic pressure within the capsid.

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Year:  2016        PMID: 27058110     DOI: 10.1021/acs.jpcb.6b02017

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

2.  Influence of Microscopic Interactions on the Flexible Mechanical Properties of Viral DNA.

Authors:  Cheng-Yin Zhang; Neng-Hui Zhang
Journal:  Biophys J       Date:  2018-08-04       Impact factor: 4.033

Review 3.  Quantitative computational models of molecular self-assembly in systems biology.

Authors:  Marcus Thomas; Russell Schwartz
Journal:  Phys Biol       Date:  2017-05-23       Impact factor: 2.583

4.  Observations of three "re-entrant" twisted structures in double-stranded DNA dispersion particles.

Authors:  Yuri M Yevdokimov; Sergey G Skuridin; Viktor I Salyanov; Efim I Kats
Journal:  Eur Biophys J       Date:  2021-11-28       Impact factor: 1.733

5.  Chromosome Translocation Inflates Bacillus Forespores and Impacts Cellular Morphology.

Authors:  Javier Lopez-Garrido; Nikola Ojkic; Kanika Khanna; Felix R Wagner; Elizabeth Villa; Robert G Endres; Kit Pogliano
Journal:  Cell       Date:  2018-02-08       Impact factor: 41.582

6.  Order and interactions in DNA arrays: Multiscale molecular dynamics simulation.

Authors:  Julija Zavadlav; Rudolf Podgornik; Matej Praprotnik
Journal:  Sci Rep       Date:  2017-07-06       Impact factor: 4.379

  6 in total

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