Literature DB >> 27054480

Public goods and metabolic strategies.

Herwig Bachmann1, Frank J Bruggeman2, Douwe Molenaar2, Filipe Branco Dos Santos3, Bas Teusink2.   

Abstract

Microbial growth can be characterized by a limited set of macroscopic parameters such as growth rate, biomass yield and substrate affinity. Different culturing protocols for laboratory evolution have been developed to select mutant strains that have one specific macroscopic growth parameter improved. Some of those mutant strains display tradeoffs between growth parameters and changed metabolic strategies, for example, a shift from respiration to fermentation. Here we discuss recent studies suggesting that metabolic strategies and growth parameter tradeoffs originate from a common set of physicochemical and cellular constraints, associated with the allocation of intracellular resources over biosynthetic processes, mostly protein synthesis. This knowledge will give insight in ecological and biological concepts and can be used for metabolic and evolutionary engineering strategies.
Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Mesh:

Year:  2016        PMID: 27054480     DOI: 10.1016/j.mib.2016.03.007

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  11 in total

1.  Positive linkage between bacterial social traits reveals that homogeneous rather than specialised behavioral repertoires prevail in natural Pseudomonas communities.

Authors:  Jos Kramer; Miguel Ángel López Carrasco; Rolf Kümmerli
Journal:  FEMS Microbiol Ecol       Date:  2020-01-01       Impact factor: 4.194

2.  Simulations reveal challenges to artificial community selection and possible strategies for success.

Authors:  Li Xie; Alex E Yuan; Wenying Shou
Journal:  PLoS Biol       Date:  2019-06-25       Impact factor: 8.029

3.  The physical boundaries of public goods cooperation between surface-attached bacterial cells.

Authors:  Michael Weigert; Rolf Kümmerli
Journal:  Proc Biol Sci       Date:  2017-07-12       Impact factor: 5.349

4.  Energetic scaling in microbial growth.

Authors:  Salvatore Calabrese; Arjun Chakrawal; Stefano Manzoni; Philippe Van Cappellen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

Review 5.  Constraint-based stoichiometric modelling from single organisms to microbial communities.

Authors:  Willi Gottstein; Brett G Olivier; Frank J Bruggeman; Bas Teusink
Journal:  J R Soc Interface       Date:  2016-11       Impact factor: 4.118

6.  Cell Surface Properties of Lactococcus lactis Reveal Milk Protein Binding Specifically Evolved in Dairy Isolates.

Authors:  Mariya Tarazanova; Thom Huppertz; Marke Beerthuyzen; Saskia van Schalkwijk; Patrick Janssen; Michiel Wels; Jan Kok; Herwig Bachmann
Journal:  Front Microbiol       Date:  2017-09-07       Impact factor: 5.640

Review 7.  Model Microbial Consortia as Tools for Understanding Complex Microbial Communities.

Authors:  Shin Haruta; Kyosuke Yamamoto
Journal:  Curr Genomics       Date:  2018-12       Impact factor: 2.236

8.  On the use of oxygenic photosynthesis for the sustainable production of commodity chemicals.

Authors:  Adam A Pérez; Que Chen; Hugo Pineda Hernández; Filipe Branco Dos Santos; Klaas J Hellingwerf
Journal:  Physiol Plant       Date:  2019-03-26       Impact factor: 4.500

9.  The fitness burden imposed by synthesising quorum sensing signals.

Authors:  A Ruparell; J F Dubern; C A Ortori; F Harrison; N M Halliday; A Emtage; M M Ashawesh; C A Laughton; S P Diggle; P Williams; D A Barrett; K R Hardie
Journal:  Sci Rep       Date:  2016-09-12       Impact factor: 4.379

Review 10.  Constraint-based modeling in microbial food biotechnology.

Authors:  Martin H Rau; Ahmad A Zeidan
Journal:  Biochem Soc Trans       Date:  2018-03-27       Impact factor: 5.407

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