| Literature DB >> 27052722 |
Piotr Cysewski1, Maciej Przybyłek2, Dorota Ziółkowska3, Karina Mroczyńska3.
Abstract
The cocrystallization landscape of benzamide and urea interacting with aliphatic and aromatic carboxylic acids was studied both experimentally and theoretically. Ten new cocrystals of benzamide were synthesized using an oriented samples approach via a fast dropped evaporation technique. Information about types of known bi-component cocrystals augmented with knowledge of simple binary eutectic mixtures was used for the analysis of virtual screening efficiency among 514 potential pairs involving aromatic carboxylic acids interacting with urea or benzamide. Quantification of intermolecular interaction was achieved by estimating the excess thermodynamic functions of binary liquid mixtures under supercooled conditions within a COSMO-RS framework. The smoothed histograms suggest that slightly more potential pairs of benzamide are characterized in the attractive region compared to urea. Finally, it is emphasized that prediction of cocrystals of urea is fairly direct, while it remains ambiguous for benzamide paired with carboxylic acids. The two known simple eutectics of urea are found within the first two quartiles defined by excess thermodynamic functions, and all known cocrystals are outside of this range belonging to the third or fourth quartile. On the contrary, such a simple separation of positive and negative cases of benzamide miscibility in the solid state is not observed. The difference in properties between urea and benzamide R2,2(8) heterosynthons is also documented by alterations of substituent effects. Intermolecular interactions of urea with para substituted benzoic acid analogues are stronger compared to those of benzamide. Also, the amount of charge transfer from amide to aromatic carboxylic acid and vice versa is more pronounced for urea. However, in both cases, the greater the electron withdrawing character of the substituent, the higher the binding energy, and the stronger the supermolecule polarization via the charge transfer mechanism.Entities:
Keywords: Binary mixtures; COSMO-RS; Cocrystals; Eutectic; Heat of mixing; Molecular descriptors; Screening
Mesh:
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Year: 2016 PMID: 27052722 PMCID: PMC4823316 DOI: 10.1007/s00894-016-2964-6
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810
The experimentally verifieda cocrystallization abilities of benzamide (B) and urea (U). The experimental characteristics of new cocrystals identified in this work are provided in supplementary material, as indicated
| Coformer | Ua | source | Ba | source |
|---|---|---|---|---|
| Oxalic acid (OA) | + | UROXAM, UROXAL, Fig. | + | This work, Fig. |
| Malonic acid (MOA) | + | URMALN, Fig. | + | This work, Fig. |
| Maleic acid (MEA) | + | CEKRUF, CEKSAM, Fig. | + | This work, Fig. |
| Fumaric acid (FA) | + | TIPWIY, Fig. | + | YOPBUB, Fig. |
| Succinic acid (SUA) | + | UNIRT, VEJXAJ, Fig. | + | BZASUC, Fig. |
| Glutaric acid (GA) | + | ZODWIY, TONGOS, Fig. | + | This work, Fig. |
| Salicylic acid (SA) | + | SLCADC | + | URISAQ, Fig. |
| 2,4-Dihydroxybenzoic acid (2,4DHBA) | + | [ | + | This work, Fig. |
| 2,5-Dihydroxybenzoic acid (2,5DHBA) | + | [ | + | This work, Fig. |
| 2,6-Dihydroxybenzoic acid (2,6DHBA) | + | [ | + | This work, Fig. |
| 3,5-Dihydroxybenzoic acid (3,5DHBA) | + | [ | + | This work, Fig. |
| Benzoic acid (BA) | − | [ | − | [ |
| Acetylsalicylic acid (ASA) | − | [ | − | This work, Fig. |
| 3-Hydroxybenzoic acid (3HBA) | + | [ | − | This work, Fig. |
| 4-Hydroxybenzoic acid (4HBA) | + | [ | − | [ |
aAdditionally, benzamide is known to be able to cocrystalize with pentafluorobenzoic acid (ESATUN), phenylacetic acid (MECHAF), 3-nitrobenzoic acid (OVEZUL), 4-nitrobenzoic acid (YOPCAI), 3,5-dinitrobenzoic acid (OVIBEB), and 4-hydroxy-3-nitrobenzoic acid (OVIBAX), while urea cocrystalizes also with 1,1′-binaphthyl-2,2′-dicarboxylic acid (ROGKOO), 2-((3-(3,4-dimethoxyphenyl)acryloyl)amino)benzoic acid (KINVAG), 2-Hydroxy-3,5-dinitrobenzoic acid (NUHYAQ), 2-phthalic acid (NUHYIY), 3-nitrobenzoic acid [39], 4-aminobenzoic acid (NUHYEU), 5-nitrosalicylic acid (NUHXUJ), adipic acid (ERIWUY), barbituric acid (EFOZAB), cis,cis-1,3,5-cyclohexanetricarboxylic acid (XORMUM), cyanuric acid (PANVUV), dl-tartaric acid (NEHPIZ), d-tartaric acid (NEZDAX), glycine (NUBHOH), heptanedioic acid (EVETAB), itaconic acid (PANVAB), parabanic acid (URPRBN10), pyrazine-2,3-dicarboxylic acid (NUHYOE), pyridine-2,6-dicarboxylic acid (NUHYUK) and suberic acid (QQQBKM)
Fig. 1Powder X-ray diffraction (PXRD) patterns and attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) spectra of benzamide-2,4DHBA (B-2,4DHBA) cocrystal (a, b) and benzamide-acetylsalicylic acid (B-ASA) mixture (c, d) obtained via droplet evaporative crystallization (DEC) on a glass surface. Spectra of pure components are also shown
Fig. 2Examples of typical plots of Hmix(x1) or Gmix(x1) corresponding to supercooled fluids of coformers involved in cocrystallization of urea or benzamide with carboxylic acids
Fig. 3Smoothed histograms characterizing distributions of Hmix and Gmix of 514 pairs of carboxylic acids interacting with benzamide or urea
Fig. 4Cumulative distributions of urea-aromatic carboxylic acid pair populations expressed as a function of increasing inclusion criterion Hmix (black lines) or Gmix (gray lines). The lines represent energetics of mixing of urea with carboxylic acids for which the ability of cocrystallization or simple binary eutectics formation is experimentally validated
Fig. 5Cumulative distributions of populations of benzamide-aromatic carboxylic pairs expressed as a function of increasing values of Hmix (black lines) or Gmix (gray lines). The lines represent energetics of mixing of benzamine with carboxylic acids for which the ability of cocrystallization or simple binary eutectics formation is experimentally validated
Fig. 6Substituent effects on binding energy of the R2 2(8) heterosynthon formed between urea or benzamide with para-substituted benzoic acid analogues (σp stands for Hammett constant [43])
Fig. 7Substituent effects on a charge transfer between urea or benzamide and para substituted analogues of benzoic acid. The amount of charge transfer (CT) from amide to aromatic carboxylic acid and vice versa is represented by Q1->2, Q2->1; σp stands for Hammett constant [43]