Literature DB >> 27051506

Requirements for multi-level systems pharmacology models to reach end-usage: the case of type 2 diabetes.

Elin Nyman1, Yvonne J W Rozendaal2, Gabriel Helmlinger3, Bengt Hamrén4, Maria C Kjellsson5, Peter Strålfors6, Natal A W van Riel2, Peter Gennemark7, Gunnar Cedersund8.   

Abstract

We are currently in the middle of a major shift in biomedical research: unprecedented and rapidly growing amounts of data may be obtained today, from in vitro, in vivo and clinical studies, at molecular, physiological and clinical levels. To make use of these large-scale, multi-level datasets, corresponding multi-level mathematical models are needed, i.e. models that simultaneously capture multiple layers of the biological, physiological and disease-level organization (also referred to as quantitative systems pharmacology-QSP-models). However, today's multi-level models are not yet embedded in end-usage applications, neither in drug research and development nor in the clinic. Given the expectations and claims made historically, this seemingly slow adoption may seem surprising. Therefore, we herein consider a specific example-type 2 diabetes-and critically review the current status and identify key remaining steps for these models to become mainstream in the future. This overview reveals how, today, we may use models to ask scientific questions concerning, e.g., the cellular origin of insulin resistance, and how this translates to the whole-body level and short-term meal responses. However, before these multi-level models can become truly useful, they need to be linked with the capabilities of other important existing models, in order to make them 'personalized' (e.g. specific to certain patient phenotypes) and capable of describing long-term disease progression. To be useful in drug development, it is also critical that the developed models and their underlying data and assumptions are easily accessible. For clinical end-usage, in addition, model links to decision-support systems combined with the engagement of other disciplines are needed to create user-friendly and cost-efficient software packages.

Entities:  

Keywords:  anti-diabetic treatment; decision-support type 2 diabetes; disease progression; mathematical modelling; systems pharmacology

Year:  2016        PMID: 27051506      PMCID: PMC4759745          DOI: 10.1098/rsfs.2015.0075

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  77 in total

1.  Insulin signaling - mathematical modeling comes of age.

Authors:  Elin Nyman; Gunnar Cedersund; Peter Strålfors
Journal:  Trends Endocrinol Metab       Date:  2012-01-28       Impact factor: 12.015

2.  Mass and information feedbacks through receptor endocytosis govern insulin signaling as revealed using a parameter-free modeling framework.

Authors:  Cecilia Brännmark; Robert Palmér; S Torkel Glad; Gunnar Cedersund; Peter Strålfors
Journal:  J Biol Chem       Date:  2010-04-26       Impact factor: 5.157

3.  Long-term models of oxidative stress and mitochondrial damage in insulin resistance progression.

Authors:  Erica J Graham; Frederick R Adler
Journal:  J Theor Biol       Date:  2013-09-25       Impact factor: 2.691

4.  A model of beta-cell mass, insulin, and glucose kinetics: pathways to diabetes.

Authors:  B Topp; K Promislow; G deVries; R M Miura; D T Finegood
Journal:  J Theor Biol       Date:  2000-10-21       Impact factor: 2.691

5.  The UVA/PADOVA Type 1 Diabetes Simulator: New Features.

Authors:  Chiara Dalla Man; Francesco Micheletto; Dayu Lv; Marc Breton; Boris Kovatchev; Claudio Cobelli
Journal:  J Diabetes Sci Technol       Date:  2014-01-01

6.  A model of NEFA dynamics with focus on the postprandial state.

Authors:  Katarina Jelic; Christine E Hallgreen; Morten Colding-Jørgensen
Journal:  Ann Biomed Eng       Date:  2009-06-13       Impact factor: 3.934

7.  Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology.

Authors:  Oliver J Britton; Alfonso Bueno-Orovio; Karel Van Ammel; Hua Rong Lu; Rob Towart; David J Gallacher; Blanca Rodriguez
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

8.  A systems biology approach reveals the physiological origin of hepatic steatosis induced by liver X receptor activation.

Authors:  Brenda S Hijmans; Christian A Tiemann; Aldo Grefhorst; Marije Boesjes; Theo H van Dijk; Uwe J F Tietge; Folkert Kuipers; Natal A W van Riel; Albert K Groen; Maaike H Oosterveer
Journal:  FASEB J       Date:  2014-12-04       Impact factor: 5.191

Review 9.  Ion channels and regulation of insulin secretion in human β-cells: a computational systems analysis.

Authors:  Leonid E Fridlyand; David A Jacobson; L H Philipson
Journal:  Islets       Date:  2013 Jan-Feb       Impact factor: 2.694

10.  Mathematical modeling of heterogeneous electrophysiological responses in human β-cells.

Authors:  Michela Riz; Matthias Braun; Morten Gram Pedersen
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

View more
  12 in total

1.  Type 2 diabetes: one disease, many pathways.

Authors:  Joon Ha; Arthur Sherman
Journal:  Am J Physiol Endocrinol Metab       Date:  2020-07-14       Impact factor: 4.310

Review 2.  The promises of quantitative systems pharmacology modelling for drug development.

Authors:  V R Knight-Schrijver; V Chelliah; L Cucurull-Sanchez; N Le Novère
Journal:  Comput Struct Biotechnol J       Date:  2016-09-23       Impact factor: 7.271

3.  Cross-talks via mTORC2 can explain enhanced activation in response to insulin in diabetic patients.

Authors:  Rasmus Magnusson; Mika Gustafsson; Gunnar Cedersund; Peter Strålfors; Elin Nyman
Journal:  Biosci Rep       Date:  2017-01-24       Impact factor: 3.840

4.  In vivo and in silico dynamics of the development of Metabolic Syndrome.

Authors:  Yvonne J W Rozendaal; Yanan Wang; Yared Paalvast; Lauren L Tambyrajah; Zhuang Li; Ko Willems van Dijk; Patrick C N Rensen; Jan A Kuivenhoven; Albert K Groen; Peter A J Hilbers; Natal A W van Riel
Journal:  PLoS Comput Biol       Date:  2018-06-07       Impact factor: 4.475

5.  Pediatric Extrapolation in Type 2 Diabetes: Future Implications of a Workshop.

Authors:  Jeffrey S Barrett; Christina Bucci-Rechtweg; S Y Amy Cheung; Margaret Gamalo-Siebers; Sebastian Haertter; Janina Karres; Jan Marquard; Yeruk Mulugeta; Cecile Ollivier; Ashley Strougo; Lisa Yanoff; Lynne Yao; Philip Zeitler
Journal:  Clin Pharmacol Ther       Date:  2020-03-16       Impact factor: 6.875

6.  Model-inferred mechanisms of liver function from magnetic resonance imaging data: Validation and variation across a clinically relevant cohort.

Authors:  Mikael F Forsgren; Markus Karlsson; Olof Dahlqvist Leinhard; Nils Dahlström; Bengt Norén; Thobias Romu; Simone Ignatova; Mattias Ekstedt; Stergios Kechagias; Peter Lundberg; Gunnar Cedersund
Journal:  PLoS Comput Biol       Date:  2019-06-25       Impact factor: 4.475

Review 7.  Quantitative Systems Pharmacology: An Exemplar Model-Building Workflow With Applications in Cardiovascular, Metabolic, and Oncology Drug Development.

Authors:  Gabriel Helmlinger; Victor Sokolov; Kirill Peskov; Karen M Hallow; Yuri Kosinsky; Veronika Voronova; Lulu Chu; Tatiana Yakovleva; Ivan Azarov; Daniel Kaschek; Artem Dolgun; Henning Schmidt; David W Boulton; Robert C Penland
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2019-06-11

8.  An Updated Organ-Based Multi-Level Model for Glucose Homeostasis: Organ Distributions, Timing, and Impact of Blood Flow.

Authors:  Tilda Herrgårdh; Hao Li; Elin Nyman; Gunnar Cedersund
Journal:  Front Physiol       Date:  2021-06-01       Impact factor: 4.566

9.  Impact of amyloid-beta changes on cognitive outcomes in Alzheimer's disease: analysis of clinical trials using a quantitative systems pharmacology model.

Authors:  Hugo Geerts; Athan Spiros; Patrick Roberts
Journal:  Alzheimers Res Ther       Date:  2018-02-02       Impact factor: 6.982

10.  Toward Better Understanding of Insulin Therapy by Translation of a PK-PD Model to Visualize Insulin and Glucose Action Profiles.

Authors:  Karen Schneck; Lai San Tham; Ali Ertekin; Jesus Reviriego
Journal:  J Clin Pharmacol       Date:  2018-10-19       Impact factor: 3.126

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.