Literature DB >> 27050259

Crystal structure of the substrate-recognition domain of the Shigella E3 ligase IpaH9.8.

Kenji Takagi1, Minsoo Kim2, Chihiro Sasakawa3, Tsunehiro Mizushima1.   

Abstract

Infectious diseases caused by bacteria have significant impacts on global public health. During infection, pathogenic bacteria deliver a variety of virulence factors, called effectors, into host cells. The Shigella effector IpaH9.8 functions as an ubiquitin ligase, ubiquitinating the NF-κB essential modulator (NEMO)/IKK-γ to inhibit host inflammatory responses. IpaH9.8 contains leucine-rich repeats (LRRs) involved in substrate recognition and an E3 ligase domain. To elucidate the structural basis of the function of IpaH9.8, the crystal structure of the LRR domain of Shigella IpaH9.8 was determined and this structure was compared with the known structures of other IpaH family members. This model provides insights into the structural features involved in substrate specificity.

Entities:  

Keywords:  E3 ligase; IpaH9.8; Shigella flexneri; effector; leucine-rich repeats

Mesh:

Substances:

Year:  2016        PMID: 27050259      PMCID: PMC4822982          DOI: 10.1107/S2053230X16002715

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  24 in total

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Authors:  Yang-Chieh Chou; Alexander F A Keszei; John R Rohde; Mike Tyers; Frank Sicheri
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2.  A disulfide driven domain swap switches off the activity of Shigella IpaH9.8 E3 ligase.

Authors:  Arefeh Seyedarabi; James A Sullivan; Chihiro Sasakawa; Richard W Pickersgill
Journal:  FEBS Lett       Date:  2010-09-08       Impact factor: 4.124

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Journal:  Curr Opin Microbiol       Date:  2009-01-20       Impact factor: 7.934

Review 4.  Exploitation of the host ubiquitin system by human bacterial pathogens.

Authors:  Hiroshi Ashida; Minsoo Kim; Chihiro Sasakawa
Journal:  Nat Rev Microbiol       Date:  2014-05-07       Impact factor: 60.633

5.  Structure of the Shigella T3SS effector IpaH defines a new class of E3 ubiquitin ligases.

Authors:  Alexander U Singer; John R Rohde; Robert Lam; Tatiana Skarina; Olga Kagan; Rosa Dileo; Nickolay Y Chirgadze; Marianne E Cuff; Andrzej Joachimiak; Mike Tyers; Philippe J Sansonetti; Claude Parsot; Alexei Savchenko
Journal:  Nat Struct Mol Biol       Date:  2008-11-09       Impact factor: 15.369

6.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
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7.  Shigella IpaH7.8 E3 ubiquitin ligase targets glomulin and activates inflammasomes to demolish macrophages.

Authors:  Shiho Suzuki; Hitomi Mimuro; Minsoo Kim; Michinaga Ogawa; Hiroshi Ashida; Takahito Toyotome; Luigi Franchi; Masato Suzuki; Takahito Sanada; Toshihiko Suzuki; Hiroko Tsutsui; Gabriel Núñez; Chihiro Sasakawa
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

8.  Shigella flexneri T3SS effector IpaH4.5 modulates the host inflammatory response via interaction with NF-κB p65 protein.

Authors:  Fang Wang; Zheng Jiang; Yan Li; Xiang He; Jiangli Zhao; Xinlong Yang; Li Zhu; Zhitao Yin; Xuelian Li; Xuesong Wang; Wei Liu; Wei Shang; Zhan Yang; Simiao Wang; Qing Zhen; Zhuangnian Zhang; Yaqin Yu; Hui Zhong; Qinong Ye; Liuyu Huang; Jing Yuan
Journal:  Cell Microbiol       Date:  2012-11-13       Impact factor: 3.715

9.  Presenting your structures: the CCP4mg molecular-graphics software.

Authors:  S McNicholas; E Potterton; K S Wilson; M E M Noble
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Review 10.  Bacterial effectors and their functions in the ubiquitin-proteasome system: insight from the modes of substrate recognition.

Authors:  Minsoo Kim; Ryota Otsubo; Hanako Morikawa; Akira Nishide; Kenji Takagi; Chihiro Sasakawa; Tsunehiro Mizushima
Journal:  Cells       Date:  2014-08-18       Impact factor: 6.600

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  6 in total

Review 1.  Exploitation of the host cell ubiquitin machinery by microbial effector proteins.

Authors:  Yi-Han Lin; Matthias P Machner
Journal:  J Cell Sci       Date:  2017-05-05       Impact factor: 5.285

2.  Super Secondary Structure Consisting of a Polyproline II Helix and a β-Turn in Leucine Rich Repeats in Bacterial Type III Secretion System Effectors.

Authors:  Dashdavaa Batkhishig; Khurelbaatar Bilguun; Purevjav Enkhbayar; Hiroki Miyashita; Robert H Kretsinger; Norio Matsushima
Journal:  Protein J       Date:  2018-06       Impact factor: 2.371

3.  Structural mechanism for guanylate-binding proteins (GBPs) targeting by the Shigella E3 ligase IpaH9.8.

Authors:  Chenggong Ji; Shuo Du; Peng Li; Qinyu Zhu; Xiaoke Yang; Chunhong Long; Jin Yu; Feng Shao; Junyu Xiao
Journal:  PLoS Pathog       Date:  2019-06-19       Impact factor: 6.823

4.  Substrate-binding destabilizes the hydrophobic cluster to relieve the autoinhibition of bacterial ubiquitin ligase IpaH9.8.

Authors:  Yuxin Ye; Yuxian Xiong; Hao Huang
Journal:  Commun Biol       Date:  2020-12-10

Review 5.  The NEL Family of Bacterial E3 Ubiquitin Ligases.

Authors:  Andrea Bullones-Bolaños; Joaquín Bernal-Bayard; Francisco Ramos-Morales
Journal:  Int J Mol Sci       Date:  2022-07-13       Impact factor: 6.208

6.  The Shigella Type III Secretion Effector IpaH4.5 Targets NLRP3 to Activate Inflammasome Signaling.

Authors:  Xiaolin Wang; Jin Sun; Luming Wan; Xiaopan Yang; Haotian Lin; Yanhong Zhang; Xiang He; Hui Zhong; Kai Guan; Min Min; Zhenxue Sun; Xiaoli Yang; Bin Wang; Mingxin Dong; Congwen Wei
Journal:  Front Cell Infect Microbiol       Date:  2020-09-30       Impact factor: 5.293

  6 in total

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