Literature DB >> 27048216

Hypothesis of Lithocoding: Origin of the Genetic Code as a "Double Jigsaw Puzzle" of Nucleobase-Containing Molecules and Amino Acids Assembled by Sequential Filling of Apatite Mineral Cellules.

Nikolai E Skoblikow1,2, Andrei A Zimin3.   

Abstract

The hypothesis of direct coding, assuming the direct contact of pairs of coding molecules with amino acid side chains in hollow unit cells (cellules) of a regular crystal-structure mineral is proposed. The coding nucleobase-containing molecules in each cellule (named "lithocodon") partially shield each other; the remaining free space determines the stereochemical character of the filling side chain. Apatite-group minerals are considered as the most preferable for this type of coding (named "lithocoding"). A scheme of the cellule with certain stereometric parameters, providing for the isomeric selection of contacting molecules is proposed. We modelled the filling of cellules with molecules involved in direct coding, with the possibility of coding by their single combination for a group of stereochemically similar amino acids. The regular ordered arrangement of cellules enables the polymerization of amino acids and nucleobase-containing molecules in the same direction (named "lithotranslation") preventing the shift of coding. A table of the presumed "LithoCode" (possible and optimal lithocodon assignments for abiogenically synthesized α-amino acids involved in lithocoding and lithotranslation) is proposed. The magmatic nature of the mineral, abiogenic synthesis of organic molecules and polymerization events are considered within the framework of the proposed "volcanic scenario".

Entities:  

Keywords:  Abiogenesis; Apatite; Genetic Code; Translation

Mesh:

Substances:

Year:  2016        PMID: 27048216     DOI: 10.1007/s00239-016-9736-x

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  32 in total

1.  Chemical etiology of nucleic acid structure: the alpha-threofuranosyl-(3'-->2') oligonucleotide system.

Authors:  K Schöning; P Scholz; S Guntha; X Wu; R Krishnamurthy; A Eschenmoser
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

2.  Organic compound synthesis on the primitive earth.

Authors:  S L MILLER; H C UREY
Journal:  Science       Date:  1959-07-31       Impact factor: 47.728

3.  Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

Authors:  Brian R Francis
Journal:  J Mol Evol       Date:  2013-06-07       Impact factor: 2.395

4.  The ribosome as a missing link in the evolution of life.

Authors:  Meredith Root-Bernstein; Robert Root-Bernstein
Journal:  J Theor Biol       Date:  2014-12-10       Impact factor: 2.691

Review 5.  Inorganic polyphosphate: a molecule of many functions.

Authors:  A Kornberg; N N Rao; D Ault-Riché
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

6.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

7.  Affinity binding phenomena of DNA onto apatite crystals.

Authors:  M Okazaki; Y Yoshida; S Yamaguchi; M Kaneno; J C Elliott
Journal:  Biomaterials       Date:  2001-09       Impact factor: 12.479

8.  Stability of nucleic acid under the effect of UV radiation.

Authors:  G Ronto; S Gaspar; A Fekete; T Kerekgyarto; A Berces; P Grof
Journal:  Adv Space Res       Date:  2002       Impact factor: 2.152

9.  Synthesis of activated pyrimidine ribonucleotides in prebiotically plausible conditions.

Authors:  Matthew W Powner; Béatrice Gerland; John D Sutherland
Journal:  Nature       Date:  2009-05-14       Impact factor: 49.962

10.  High-efficiency gene delivery for expression in mammalian cells by nanoprecipitates of Ca-Mg phosphate.

Authors:  E H Chowdhury; Megumi Kunou; Masato Nagaoka; A K Kundu; Takashi Hoshiba; Toshihiro Akaike
Journal:  Gene       Date:  2004-10-27       Impact factor: 3.688

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  1 in total

1.  Mineral Grains, Dimples, and Hot Volcanic Organic Streams: Dynamic Geological Backstage of Macromolecular Evolution.

Authors:  Nikolai E Skoblikow; Andrei A Zimin
Journal:  J Mol Evol       Date:  2018-03-28       Impact factor: 2.395

  1 in total

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