Literature DB >> 27046163

The evolving world of small RNAs from RNA viruses.

Mei-Ling Li1, Kuo-Feng Weng2, Shin-Ru Shih2,3,4,5, Gary Brewer1.   

Abstract

RNA virus infection in plants and invertebrates can produce virus-derived small RNAs. These RNAs share features with host endogenous small interfering RNAs (siRNAs). They can potentially mediate RNA interference (RNAi) and related RNA silencing pathways, resulting in specific antiviral defense. Although most RNA silencing components such as Dicer, Ago2, and RISC are conserved among eukaryotic hosts, whether RNA virus infection in mammals can generate functional small RNAs that act in antiviral defense remains under discussion. Here, we review recent studies on the molecular and biochemical features of viral siRNAs and other virus-derived small RNAs from infected plants, arthropods, nematodes, and vertebrates and discuss the genetic pathways for their biogenesis and their roles in antiviral activity. WIREs RNA 2016, 7:575-588. doi: 10.1002/wrna.1351 For further resources related to this article, please visit the WIREs website.
© 2016 Wiley Periodicals, Inc.

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Year:  2016        PMID: 27046163      PMCID: PMC5722025          DOI: 10.1002/wrna.1351

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  108 in total

1.  RNAi-mediated immunity provides strong protection against the negative-strand RNA vesicular stomatitis virus in Drosophila.

Authors:  Stefanie Mueller; Valérie Gausson; Nicolas Vodovar; Safia Deddouche; Laurent Troxler; Jonathan Perot; Sébastien Pfeffer; Jules A Hoffmann; Maria-Carla Saleh; Jean-Luc Imler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-26       Impact factor: 11.205

2.  Sindbis virus-induced silencing of dengue viruses in mosquitoes.

Authors:  Z N Adelman; C D Blair; J O Carlson; B J Beaty; K E Olson
Journal:  Insect Mol Biol       Date:  2001-06       Impact factor: 3.585

3.  Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila.

Authors:  Delphine Galiana-Arnoux; Catherine Dostert; Anette Schneemann; Jules A Hoffmann; Jean-Luc Imler
Journal:  Nat Immunol       Date:  2006-03-23       Impact factor: 25.606

4.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

5.  Phosphate and R2D2 restrict the substrate specificity of Dicer-2, an ATP-driven ribonuclease.

Authors:  Elif Sarinay Cenik; Ryuya Fukunaga; Gang Lu; Robert Dutcher; Yeming Wang; Traci M Tanaka Hall; Phillip D Zamore
Journal:  Mol Cell       Date:  2011-03-17       Impact factor: 17.970

6.  Alphavirus-derived small RNAs modulate pathogenesis in disease vector mosquitoes.

Authors:  Kevin M Myles; Michael R Wiley; Elaine M Morazzani; Zach N Adelman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-01       Impact factor: 11.205

7.  Viral Small-RNA Analysis of Bombyx mori Larval Midgut during Persistent and Pathogenic Cytoplasmic Polyhedrosis Virus Infection.

Authors:  Aris Zografidis; Filip Van Nieuwerburgh; Anna Kolliopoulou; Konstantinos Apostolou-Karampelis; Steven R Head; Dieter Deforce; Guy Smagghe; Luc Swevers
Journal:  J Virol       Date:  2015-09-02       Impact factor: 5.103

8.  The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing.

Authors:  Diane Bortolamiol; Maghsoud Pazhouhandeh; Katia Marrocco; Pascal Genschik; Véronique Ziegler-Graff
Journal:  Curr Biol       Date:  2007-09-18       Impact factor: 10.834

9.  Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.

Authors:  Poornima Parameswaran; Ella Sklan; Courtney Wilkins; Trever Burgon; Melanie A Samuel; Rui Lu; K Mark Ansel; Vigo Heissmeyer; Shirit Einav; William Jackson; Tammy Doukas; Suman Paranjape; Charlotta Polacek; Flavia Barreto dos Santos; Roxana Jalili; Farbod Babrzadeh; Baback Gharizadeh; Dirk Grimm; Mark Kay; Satoshi Koike; Peter Sarnow; Mostafa Ronaghi; Shou-Wei Ding; Eva Harris; Marie Chow; Michael S Diamond; Karla Kirkegaard; Jeffrey S Glenn; Andrew Z Fire
Journal:  PLoS Pathog       Date:  2010-02-12       Impact factor: 6.823

10.  An RIG-I-Like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans.

Authors:  Rui Lu; Erbay Yigit; Wan-Xiang Li; Shou-Wei Ding
Journal:  PLoS Pathog       Date:  2009-02-06       Impact factor: 6.823

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  13 in total

Review 1.  What Really Rigs Up RIG-I?

Authors:  Sailen Barik
Journal:  J Innate Immun       Date:  2016-07-21       Impact factor: 7.349

2.  Enoxacin Shows Broad-Spectrum Antiviral Activity against Diverse Viruses by Enhancing Antiviral RNA Interference in Insects.

Authors:  Bao Lyu; Chang Wang; Yuanyuan Bie; Jing Kong; An Wang; Liang Jin; Yang Qiu; Xi Zhou
Journal:  J Virol       Date:  2021-12-15       Impact factor: 6.549

3.  In Silico Methods for the Identification of Viral-Derived Small Interfering RNAs (vsiRNAs) and Their Application in Plant Genomics.

Authors:  Aditya Narayan; Shafaque Zahra; Ajeet Singh; Shailesh Kumar
Journal:  Methods Mol Biol       Date:  2022

4.  A universal mammalian vaccine cell line substrate.

Authors:  Jackelyn Murray; Kyle V Todd; Abhijeet Bakre; Nichole Orr-Burks; Les Jones; Weilin Wu; Ralph A Tripp
Journal:  PLoS One       Date:  2017-11-27       Impact factor: 3.240

Review 5.  RNA regulatory processes in RNA virus biology.

Authors:  Shaun T Cross; Daniel Michalski; Megan R Miller; Jeffrey Wilusz
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-04-29       Impact factor: 9.957

Review 6.  Viral RNA Silencing Suppression: The Enigma of Bunyavirus NSs Proteins.

Authors:  Marcio Hedil; Richard Kormelink
Journal:  Viruses       Date:  2016-07-23       Impact factor: 5.048

Review 7.  Evolution of RNA- and DNA-guided antivirus defense systems in prokaryotes and eukaryotes: common ancestry vs convergence.

Authors:  Eugene V Koonin
Journal:  Biol Direct       Date:  2017-02-10       Impact factor: 4.540

8.  Differential Characteristics of Viral siRNAs between Leaves and Roots of Wheat Plants Naturally Infected with Wheat Yellow Mosaic Virus, a Soil-Borne Virus.

Authors:  Linying Li; Ida Bagus Andika; Yu Xu; Yan Zhang; Xiangqi Xin; Lifeng Hu; Zongtao Sun; Gaojie Hong; Yang Chen; Fei Yan; Jian Yang; Junmin Li; Jianping Chen
Journal:  Front Microbiol       Date:  2017-09-20       Impact factor: 5.640

Review 9.  Soybean Resistance to Soybean Mosaic Virus.

Authors:  Kristin Widyasari; Mazen Alazem; Kook-Hyung Kim
Journal:  Plants (Basel)       Date:  2020-02-08

Review 10.  Tricks and threats of RNA viruses - towards understanding the fate of viral RNA.

Authors:  Lukasz Markiewicz; Karolina Drazkowska; Pawel J Sikorski
Journal:  RNA Biol       Date:  2021-02-22       Impact factor: 4.652

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