Literature DB >> 27044649

Analysis of Differential Proteins in Two Wing-Type Females of Sogatella furcifera (Hemiptera: Delphacidae).

Zi-Qiang Liang1, Shao-Yun Song1, Shi-Ke Liang1, Fang-Hai Wang2.   

Abstract

Sogatella furcifera(Horvath) is an important rice pest with the wing dimorphism, including macropterous and brachypterous morphs. The protein expression profiles in two wing-type adults and two wing-type disc fifth-instar nymphs were analyzed using two-dimensional gel protein electrophoresis and mass spectrometry. In adults and fifth-instar nymphs, 127 and 162 protein spots were detected, respectively. Fifty-five differentially expressed protein spots were identified between the long-winged adults and the short-winged adults, and 62 differentially expressed protein spots were found between the long-winged disc fifth-instar nymphs and short-winged disc fifth-instar nymphs. In long-winged and short-winged adults, six and seven specific protein spots were identified, respectively, with five and seven protein spots having more than threefold increased level, respectively. In long-winged and short-winged disc morph nymphs, 8 and 12 specific protein spots were identified, respectively, with 11 and 17 spots containing more than threefold increased level, respectively. Among the 16 identified proteins, five proteins are associated with muscle function, suggesting that muscle is a main tissue where the genes were differentially expressed between the two wing types. In addition, the content of a peptidase with an insulinase domain was higher (by 3.02 ± 0.59 fold) in the short-winged fifth-instar nymphs than in the long-winged fifth-instar nymphs, which suggests that this peptidase may be involved in wing differentiation by regulating insulin receptors. The results of this study provide some genetic clues for the wing differential development inS. furcifera and provide more references for future studies.
© The Author 2016. Published by Oxford University Press on behalf of the Entomological Society of America.

Entities:  

Keywords:  Sogatella furcifera; differential two-dimensional gel electrophoresis; mass spectrometry; wing dimorphism

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Year:  2016        PMID: 27044649      PMCID: PMC4819851          DOI: 10.1093/jisesa/iew024

Source DB:  PubMed          Journal:  J Insect Sci        ISSN: 1536-2442            Impact factor:   1.857


Sogatella furcifera (Horvath) is one of the rice planthoppers and it sucks rice phloem sap as food. The pest causes poor plant growth and putrescence when it outbreaks. This rice planthopper has a wing dimorphism phenomenon. The macropterous morphs are good at migrating, while the brachypterous morphs have a strong ability to reproduce (Denno et al. 1989, Ayoade et al. 1999). Therefore, the ratio of the wing-type fluctuations has a significant impact on S. furcifera population and can help us predict the occurrence and outbreak of the pest. Differences in the external environmental factors (light, nutritional condition, etc.) can affect S. furcifera wing development. Short exposure to light is conducive to the emergence of short-winged individuals, while long time light exposure increases the number of long-winged individuals (Liu et al. 2010). Malnutritional rice plants can directly induce the development of long-winged morphs (Saxena et al. 1981). In addition, in a high population density, the proportion of long-winged S. furcifera increases (Matsumura 1996). There are many reports on the wing-type development of S. furcifera at molecular level. For example, a wingless gene has been found to manipulate the wing dimorphism (Yu et al. 2014). Differential DNA methylation is found between the two wing types S. furcifera (Zhou et al. 2013). Recently, the wing polyphenism of the rice planthopper is reported to be controlled by two insulin receptors (Xu et al. 2015), which is an excellent explanation for the wing dimorphism. However, fewer researches are carried out to investigate the mechanism of wing dimorphism at protein level and two-dimensional (2D) electrophoresis on S. furcifera wing type has not been reported so far. 2D electrophoresis can be used to compare differential protein expression profiles in individuals and cells under different physiological or pathological conditions. Differentially expressed proteins can be identified followed by functional and interaction analysis. 2D electrophoresis has been widely used in insect studies, including neurobiology, immunology, toxicology, etc. (Vierstraete et al. 2003, Baggerman et al. 2005, Shevehenko et al. 2005). For the study of insect wing, the differentiation of the Drosophila melanogaster wing disc is explored with this method (Alonso and Santaren 2005). We have compared protein expression profiles between the two wing-type females of S. furcifera by SDS–PAGE electrophoresis and found three significantly differentially expressed protein bands. The protein expression profiles in the two wing types of S. furcifera are not the same as indicated by SDS–PAGE. However, SDS–PAGE has a much lower resolution of protein separation than 2D electrophoresis and it is difficult to separate a single protein for further study. In this study, 2D electrophoresis was performed to investigate the protein expression profiles associated with the wing dimorphism. In rice planthopper, the nymph stage is a critical period of wing determination. Until the fifth-instar nymph, we can clearly observe the long-winged and short-winged disc differentiation under the stereoscope. Two wing morphs of female adults and two wing disc morphs of female fifth-instar nymphs were chosen as research objects, so that a more comprehensive analysis of wing development can be done.

Materials and Methods

Insects and Culture Conditions

Insects were collected from the rice field located in the South China Agricultural University, Guangzhou, China. The rearing condition was under a 16:8 (L:D) h photoperiodic regime at 28 ± 2°C. The fifth-instar nymphs or adults were collected and cryopreserved. The two-wing phenotypes of female adults and the two-wing phenotypes disc of female fifth-instar nymphs, whose front wing disc extending to the fourth or second abdominal segment, were used as experimental samples.

Sample Preparation and 2D PAGE

Protein samples were prepared from long-winged adults, short-winged adults, long-winged disc fifth-instar nymphs, and short-winged disc fifth-instar nymphs of female S. furcifera (equivalent of∼50 mg). Samples were ground to powder in liquid nitrogen and extracted with lysis buffer (8 M urea, 2 M thiourea, 4% [w/v] CHAPS, 65 mM DTT, and 0.5% [v/v] IPG buffer) for 3 h on ice (Wang et al. 2011). The protein concentration was estimated using Bradford protein assay. Typically ∼500 μg of each extract was supplemented to 250 μl with rehydration buffer. Iso-electric focusing was performed using Ettan IPGphor IEF system and 13 cm linear Immobiline DryStrips pH 3–10 for a total of 38.8 kVh. IEF gel strips were placed onto the second dimension 10% SDS–PAGE gels and run until the dye reached the bottom of the gel. Each experiment was repeated at least three times.

Image Acquisition and Spots Analysis

The gels were scanned with gel imager (GS-800, Bio-Rad). Three biological replicates of 2D gel had a correlation coefficient value above 0.65. For each protein sample, spots were detected and matched automatically and edited manually with PDQuest 2D gel analysis software (version 8.1.0, Bio-Rad). The detected spots presented in all the replicate gels to be accounted. Student’s t-test was used to determine statistically significance (P < 0.05).

MALDI–TOF/TOF Analysis and Protein Identification

The selected protein spots were washed in ddH20 and 50 mM NH4HCO3 for 30 min. each. Both of them were digested overnight at 37°C with trypsin digesting (in-gel). In-gel digested peptides were analyzed with a MALDI MS/MS mass spectrometer, Autoflex-TOF/TOF (Bruker Daltonics, Bremen, Germany). The peak list was generated with the Flex Analysis (version 3.3, Bruker Daltonics). Peptide mass finger (PMF) printing and MS/MS ion search were performed with the MASCOT software (version 2.2, Matrix Science). Mascot searches were conducted using from NCBI nonredundant database (released January 2012 or later). The settings chosen for identification were as follows: one missed cleavage site; carbamidomethy1 as fixed modification of cysteine; variable modification of oxidation on methionine residue; MS tolerance of 100 ppm and MS/MS tolerance of 0.6 Da; enzyme used as trypsin, and a peptide charge setting as +1. A match protein with the best score was accepted as successful identification. Protein identification was considered to be significant with at least two of the following three criteria: PMF and MS/MS ion searches were statistically significant (P < 0.05); sequence coverage ≥13%; corresponding location of the protein spots.

Bioinformatics Analysis

GI numbers of differential identified proteins by 2D electrophoresis were uploaded to the uniprotKB database (www.uniprot.org) to obtain gene ontology (GO) annotation and functional enrichment analysis using DAVID v6.7 bioinformatics resources. The enrichment analysis was done using Fisher exact test (Zhou et al. 2005). Functional categories with P < 0.05 were considered to be significant after multiple term testing by Bonferroni correction (Forstner et al. 2015). The STRING database was used to construct the protein–protein interactions (PPIs) networks of identified proteins.

Results

Protein Modulation in Two Wing-Types Female Adults and Two Wing-Types Disc Female Fifth-Instar Nymphs

After the 2D electrophoresis, protein spots were visualized through Coomassie G-250 staining. The representative 2D protein profiles were shown in Fig. 1. Overall, 127 and 162 protein spots were detected in the profiles of female adults and fifth-instar nymphs using PDQuest 2D analysis software. The numbers of the protein spots that were detected in biological triplicates of 2D gels from long-winged adults, short-winged adults, long-winged disc fifth-instar nymphs, and short-winged disc fifth-instar nymphs were 120, 121, 155, and 157, respectively. The protein responses of long-winged adults and long-winged disc fifth-instar nymphs were compared with those of short-winged adults and short-winged disc fifth-instar nymphs. The numbers of significant differentially expressed protein spots (P < 0.05) in adults and fifth-instar nymphs were 55 (22 [40%] in the long-winged adults and 33 [60%] in the short-winged adults) and 62 (25 [40.32%] in the long-winged disc fifth-instar nymphs and 37 [59.68%] in short-winged disc fifth-instar nymphs), respectively. Depending on the content of these spots, we divided them into three groups: those whose abundance increased by one- to twofold, those whose abundance increased by two- to threefold and those whose abundance increased by more than threefold (Fig. 2). Furthermore, the long-winged adults and long-winged disc fifth-instar nymphs had six and five specific protein spots, respectively, while the short-winged adults and short-winged disc fifth-instar nymphs both had seven specific protein spots. Twenty-five spots from specific proteins and 48 spots that showed more than threefold increase in abundance were cut from the gels for mass spectrometric analysis. Finally, 20 protein spots were identified (Table 1). The spots from long-winged adults or long-winged disc fifth-instar nymphs had a much higher success rate of identification than those short-winged adults or short-winged disc fifth-instar nymphs. Myosin light chain (MLC) and Myosin RLC2 (MRLC2) were both identified in three spots, respectively, and other proteins were identified in one spots.
Fig. 1.

Representative 2D profiles of female S. furcifera. (A) Long-winged adult (left) compared with short-winged adult. (B) Long-winged disc fifth-instar nymph (left) compared with short-winged disc fifth-instar nymph. Specific proteins are marked by red arrow. The proteins having more than triple content increasing are marked by green arrow. Molecular masses of marker proteins and pI are mentioned on left-hand side and at the top, respectively.

Fig. 2.

Content classification of significant (P < 0.05) differentially expressed proteins. (A) Long-winged adult. (B) Short-winged adult. (C) Long-winged disc fifth-instar nymph. (D) Short-winged disc fifth-instar nymph.

Table 1.

Identified proteins from female adults and fifth-instar nymphs of S. furcifera

Identified proteinExpression level (fold change with SE values)FunctiontdfPCategoriesa
Adult
Myosin RLC2 (MRLC2) #bSomatic muscle developmentB
3.67 ± 0.58b4.6420.044
4.10 ± 0.27b5.8220.028
Myosin light chain (MLC) #bMuscle myosin complexC
3.44 ± 0.26b9.3120.011
3.39 ± 0.32b7.4720.017
ATP synthase delta chain (ATPSDC)3.81 ± 0.53bATP synthesis coupled proton transport5.3120.034B
Ferritin subunit (FerS)3.34 ± 0.17bCellular iron ion homeostasis13.8620.005B
14-3-3 Protein zeta isoform X1 (14-3-3zeta)3.91 ± 0.67bActivation of tryptophan 5-monooxygenase activity4.3520.049B
Glutathione Transferase (GluT)3.12 ± 0.47cGlutathione metabolic process4.5720.045B
Tropomyosin 2 (Tm2)3.27 ± 0.12cMuscle thin filament tropomyosin18.2520.030C
Fifth-instar nymph
Flightin (Fln)bFlightB
Pupal cuticle protein C1 (PCPC1)3.32 ± 0.51bStructural constituent of chitin-based cuticle4.5620.046M
Elongation factor 1-alpha (EF1A)4.01 ± 0.21bTranslation14.1020.005B
Carboxylesterase (Car)3.89 ± 0.66bCarboxylic ester hydrolase activity4.4120.048M
Electron transfer flavoprotein subunit alpha (ETFSA)3.56 ± 0.58bEctodermal digestive tract morphogenesis4.3720.049B
Transketolase (Tra)3.35 ± 0.29bCytoplasmic microtubule organization0.1420.015B
Imaginal disc growth factor (IDGF)4.11 ± 0.42bCarbohydrate metabolic processes7.3620.018B
Actin-depolymerizing factor 1 (ADF1)4.51 ± 0.42cActin filament depolymerization8.3820.014B
Peptidase from Family M16 (Pep)3.02 ± 0.59cPeptidase4.3020.049B

#, the identified proteins are present in more than one spot; ∞, specific proteins.

Categories: molecular functions (M); biological processes (B); and cellular component (C).

A higher content of protein in long-winged adults or long-winged disc fifth-instar nymphs.

A higher content of protein in short-winged adults or short-winged disc fifth-instar nymphs.

Representative 2D profiles of female S. furcifera. (A) Long-winged adult (left) compared with short-winged adult. (B) Long-winged disc fifth-instar nymph (left) compared with short-winged disc fifth-instar nymph. Specific proteins are marked by red arrow. The proteins having more than triple content increasing are marked by green arrow. Molecular masses of marker proteins and pI are mentioned on left-hand side and at the top, respectively. Content classification of significant (P < 0.05) differentially expressed proteins. (A) Long-winged adult. (B) Short-winged adult. (C) Long-winged disc fifth-instar nymph. (D) Short-winged disc fifth-instar nymph. Identified proteins from female adults and fifth-instar nymphs of S. furcifera #, the identified proteins are present in more than one spot; ∞, specific proteins. Categories: molecular functions (M); biological processes (B); and cellular component (C). A higher content of protein in long-winged adults or long-winged disc fifth-instar nymphs. A higher content of protein in short-winged adults or short-winged disc fifth-instar nymphs.

Functional Annotation Clustering

Based on sequence similarities to Drosophila protein sequences, 16 identified proteins were used for GO analysis. These proteins were categorized into molecular functions (2 proteins), cellular component (2 proteins), and biological processes (12 proteins), suggesting that proteins involved in biological processes had a great influence on wing dimorphism. Using the functional annotation clustering tool from DAVID v6.7 bioinformatics resources, the 16 identified proteins (five of them were not clustered) were divided into four clusters: muscle, phosphorylation, organelle lumen, and ion binding. The enrichment scores of four clusters were 3.27, 1.12, 0.43, and 0.35, respectively. In addition, peptidase from Family M16 (Pep) was gathered in three clusters: phosphorylation, organelle lumen, and ion binding. MLC and MRLC2 were clustered into muscle and organelle lumen. Importantly, the contents of MLC and MRLC2 in the long-winged adults were three times higher than that in the short-winged adults. Myosin’s main function is in muscle contraction and is mainly divided into two categories, muscle myosin and nonmuscle myosin. Flying movement requires the support of formidable muscle tissue (Huxley and Niedergerke 1954). Thus, the different content of the two myosin light chains may come from muscle myosin.

Network Analysis

First, 16 identified proteins were uploaded to String database (http://string-db.org/). A functional interaction network of the 21 proteins (five were predicted functional partners), with 42 PPIs based on Drosophila database, was constructed (Fig. 3). The network had two strong connection parts; one part contained eight proteins associated with muscle and another part contained five proteins involving in ATP synthase. The two parts linked together through ATP synthase gamma subunit and ATP synthase OSCP. Myosin movement required a lot of energy from ATP hydroxylation, which could explain the higher content of ATPSDC, OSCP, and MLC in long-winged adults.
Fig. 3.

PPIs network of identified and predicted proteins. Stronger associations are represented by thicker lines. Five predicted partners: ATP synthase gamma subunit (FBpp0084907), ATP synthase OSCP (Oscp), Upheld (up), troponin (wupA), and myosin heavy chain (Mhc).

PPIs network of identified and predicted proteins. Stronger associations are represented by thicker lines. Five predicted partners: ATP synthase gamma subunit (FBpp0084907), ATP synthase OSCP (Oscp), Upheld (up), troponin (wupA), and myosin heavy chain (Mhc).

Discussion

This study analyzed S. furcifera differential proteins in two wing morphs of female adult and two wing disc morphs of female fifth-instar nymph, using 2D electrophoresis for the first time. In general, the number of protein spots detected in adults was less than that in fifth-instar nymphs, and the contents of significant differentially proteins were generally higher in short-winged adults or short-winged disc fifth-instar nymphs compared with long-winged adults or long-winged disc fifth-instar nymphs. One of the reasons for this may be the storage proteins (SPs), which are usually higher in fifth-instar nymphs than in adults. In the last instar nymph, the concentration of SPs is at its peak, after which SPs are consumed during development and reproduction (Levenbook et al. 1985). Thus, more protein spots could be detected in fifth-instar nymphs. The SP Calliphorin was injected into the body of Calliphora vicina with a radioactive marker and degradation product (phenylalanine) was detected to be involved in the formation of the flight myosin (Levenbook and Bauer 1984). The decrease of significant differential protein content in long-winged adults or long-winged disc fifth-instar nymphs seems to derive from flight myosin. The insect wing dimorphism is represented not only by the wing shape, but also by the muscle function (Braendle et al. 2006). In the long-winged and short-winged Nilaparvata lugens, some differential expressed genes were found to be associated with muscle formation, for example flightin, troponin C4, titin, and myosin heavy chain (Xue et al. 2010). In the 2D profiles of two wing-types adults and two wing-types disc fifth-instar nymphs of female S. furcifera, we found several differential proteins associated with muscle function, including Fln, MRLC2, MMLC, actin-depolymerizing factor 1 (ADF1), and Tropomyosin 2. The interaction of flightin with myosin has a pivotal role in flight muscle activation (Vigoreaux 2001, Ayer and Vigoreaux 2003), long-winged adults have flight capacity, and short-winged adults do not; thus, there are lower levels of flightin, MRLC2, and MLC in short-winged adults than in long-winged adults. Tm can inhibit actin by activating the Mg2+-ATPase activity of myosin (Liu and Bretscher 1989); therefore, Tropomyosin 2 should have a higher expression in short-winged adults than in long-winged adults with flight capacity. Moreover, the expression of imaginal disc growth factor (IDGF) in long-winged disc fifth-instar nymphs was 4.11 ± 0.42 times higher than in short-winged disc fifth-instar nymphs. IDGF can affect proliferation of wing disc cell and increase its movement ability (Kawamura et al. 1999). At the same time, ADF1 have a 4.51 ± 0.42 fold increasing in short-winged disc fifth-instar nymphs. ADF can depolymerize microfilaments. We speculate that both IDGF and ADF1 might be involved in the wing dimorphism. In a future investigation, the detailed muscle composition of the two wing morphs of S. furcifera should be determined, which would help us to understand the long distance flying mechanism of the insects and muscle differences of insects with wing dimorphism. Population density and nutritional quality of host plants are generally considered to be related to wing dimorphism (Kisimoto 1956, Saxena et al. 1981, Iwanaga et al. 1985, Syobu et al. 1986). The insulin/insulin-like growth factor signaling pathway (IIS pathway) is one of the nutritional pathways thought to be involved in wing dimorphism. Recently, the wing type of rice planthopper was confirmed to be regulated by IIS pathway, which has two insulin receptors to control wing dimorphism (Xu et al. 2015). We have found that Pep (Family M16), containing an insulinase domain, has a 3.02 ± 0.59 fold increasing protein content in short-winged disc fifth-instar nymphs. We hypothesized that the concentration of insulinase in S. furcifera nymphs increases substantially and remains at a high level under an adequate nutrition. This insulinase affects the degradation of insulin or insulin/insulin-like growth factor, which regulates the IIS pathway and PI (3) K-Akt signaling cascade to control wing dimorphism, leading to the appearance of short-winged adults. A regulating mechanism of wing polyphenism is shown in Fig. 4. In future studies, we will clone insulinase gene and analyze its exact role in wing dimorphism.
Fig. 4.

A possible regulating mechanism of wing dimorphism in S. furcifera. IIS pathway is inside the dotted box. Regulatory proteins or factors are marked by yellow oval. Signaling cascades are marked by red rectangle.

A possible regulating mechanism of wing dimorphism in S. furcifera. IIS pathway is inside the dotted box. Regulatory proteins or factors are marked by yellow oval. Signaling cascades are marked by red rectangle. Due to the lack of S. furcifera proteome and genome databases, although the successful rate of protein identification is only 21.92% we still identified some proteins that are related with the wing dimorphism. These proteins provide a reference for understanding the mechanism of wing dimorphism in planthopper. The genome (Xue et al. 2014) and transcriptome (Xue et al. 2010) of N. lugens have been published. These achievements can accelerate the establishment of various databases of rice planthopper and helpful to protein research in S. furcifera.
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