Literature DB >> 27043972

Febrifugine analogues as Leishmania donovani trypanothione reductase inhibitors: binding energy analysis assisted by molecular docking, ADMET and molecular dynamics simulation.

Rajan Kumar Pandey1, Bajarang Vasant Kumbhar2, Shubham Srivastava3, Ruchi Malik3, Shyam Sundar4, Ambarish Kunwar2, Vijay Kumar Prajapati1.   

Abstract

Visceral leishmaniasis affects people from 70 countries worldwide, mostly from Indian, African and south American continent. The increasing resistance to antimonial, miltefosine and frequent toxicity of amphotericin B drives an urgent need to develop an antileishmanial drug with excellent efficacy and safety profile. In this study we have docked series of febrifugine analogues (n = 8813) against trypanothione reductase in three sequential docking modes. Extra precision docking resulted into 108 ligands showing better docking score as compared to two reference ligand. Furthermore, 108 febrifugine analogues and reference inhibitor clomipramine were subjected to ADMET, QikProp and molecular mechanics, the generalized born model and solvent accessibility study to ensure the toxicity caused by compounds and binding-free energy, respectively. Two best ligands (FFG7 and FFG2) qualifying above screening parameters were further subjected to molecular dynamics simulation. Conducting these studies, here we confirmed that 6-chloro-3-[3-(3-hydroxy-2-piperidyl)-2-oxo-propyl]-7-(4-pyridyl) quinazolin-4-one can be potential drug candidate to fight against Leishmania donovani parasites.

Entities:  

Keywords:  ROC curve; molecular docking; molecular dynamics; trypanothione reductase; visceral leishmaniasis

Mesh:

Substances:

Year:  2016        PMID: 27043972     DOI: 10.1080/07391102.2015.1135298

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  12 in total

1.  Copper (II) complexes with N, S donor pyrazole-based ligands as anticancer agents.

Authors:  Monireh Ghorbanpour; Behzad Soltani; Ali Mota; Jaber Jahanbin Sardroodi; Elnaz Mehdizadeh Aghdam; Ali Shayanfar; Ommoleila Molavi; Rahim Mohammad-Rezaei; Mostafa Ebadi-Nahari; Christopher J Ziegler
Journal:  Biometals       Date:  2022-08-24       Impact factor: 3.378

2.  Exploring actinomycetes natural products to identify potential multi-target inhibitors against Leishmania donovani.

Authors:  Satyendra Singh; Vijay Kumar Prajapati
Journal:  3 Biotech       Date:  2022-08-20       Impact factor: 2.893

3.  Molecular insights into Mmpl3 leads to the development of novel indole-2-carboxamides as antitubercular agents.

Authors:  Rajdeep Ray; Sumit Raosaheb Birangal; Fajeelath Fathima; Helena I Boshoff; He Eun Forbes; Raghu H Chandrashekhar; Gautham G Shenoy
Journal:  Mol Syst Des Eng       Date:  2022-03-02

4.  Involvement of 5-Serotonin and Substance p Pathways in Dichroa Alkali Salt-Induced Acute Pica in Rats.

Authors:  Lina Ma; Sidi Li; Jian Li; Guangping Zhang; Hongping Hou; Zuguang Ye
Journal:  Front Pharmacol       Date:  2021-04-22       Impact factor: 5.810

5.  Exploring Leishmania secretory proteins to design B and T cell multi-epitope subunit vaccine using immunoinformatics approach.

Authors:  Nazia Khatoon; Rajan Kumar Pandey; Vijay Kumar Prajapati
Journal:  Sci Rep       Date:  2017-08-15       Impact factor: 4.379

6.  Exploring dengue genome to construct a multi-epitope based subunit vaccine by utilizing immunoinformatics approach to battle against dengue infection.

Authors:  Mudassar Ali; Rajan Kumar Pandey; Nazia Khatoon; Aruna Narula; Amit Mishra; Vijay Kumar Prajapati
Journal:  Sci Rep       Date:  2017-08-23       Impact factor: 4.379

Review 7.  Targeting Trypanothione Reductase, a Key Enzyme in the Redox Trypanosomatid Metabolism, to Develop New Drugs against Leishmaniasis and Trypanosomiases.

Authors:  Theo Battista; Gianni Colotti; Andrea Ilari; Annarita Fiorillo
Journal:  Molecules       Date:  2020-04-21       Impact factor: 4.411

8.  Novel Immunoinformatics Approaches to Design Multi-epitope Subunit Vaccine for Malaria by Investigating Anopheles Salivary Protein.

Authors:  Rajan Kumar Pandey; Tarun Kumar Bhatt; Vijay Kumar Prajapati
Journal:  Sci Rep       Date:  2018-01-18       Impact factor: 4.379

9.  Interaction of microtubule depolymerizing agent indanocine with different human αβ tubulin isotypes.

Authors:  Bajarang Vasant Kumbhar; Dulal Panda; Ambarish Kunwar
Journal:  PLoS One       Date:  2018-03-27       Impact factor: 3.240

10.  A multi-method and structure-based in silico vaccine designing against Echinococcus granulosus through investigating enolase protein.

Authors:  Mohammad Mostafa Pourseif; Mitra Yousefpour; Mohammad Aminianfar; Gholamali Moghaddam; Ahmad Nematollahi
Journal:  Bioimpacts       Date:  2019-03-08
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