Literature DB >> 27042946

Measuring the Composition and Stable-Isotope Labeling of Algal Biomass Carbohydrates via Gas Chromatography/Mass Spectrometry.

Brian O McConnell1, Maciek R Antoniewicz1.   

Abstract

We have developed a method to measure carbohydrate composition and stable-isotope labeling in algal biomass using gas chromatography/mass spectrometry (GC/MS). The method consists of two-stage hydrochloric acid hydrolysis, followed by chemical derivatization of the released monomer sugars and quantification by GC/MS. Fully (13)C-labeled sugars are used as internal standards for composition analysis. This convenient, reliable, and accurate single-platform workflow offers advantages over existing methods and opens new opportunities to study carbohydrate metabolism of algae under autotrophic, mixotrophic, and heterotrophic conditions using metabolic flux analysis and isotopic tracers such as (2)H2O and (13)C-glucose.

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Year:  2016        PMID: 27042946     DOI: 10.1021/acs.analchem.6b00779

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  13 in total

1.  Aldolase B-Mediated Fructose Metabolism Drives Metabolic Reprogramming of Colon Cancer Liver Metastasis.

Authors:  Pengcheng Bu; Kai-Yuan Chen; Kun Xiang; Christelle Johnson; Scott B Crown; Nikolai Rakhilin; Yiwei Ai; Lihua Wang; Rui Xi; Inna Astapova; Yan Han; Jiahe Li; Bradley B Barth; Min Lu; Ziyang Gao; Robert Mines; Liwen Zhang; Mark Herman; David Hsu; Guo-Fang Zhang; Xiling Shen
Journal:  Cell Metab       Date:  2018-04-26       Impact factor: 27.287

2.  Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-09-23       Impact factor: 9.783

3.  Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote Chlorella vulgaris.

Authors:  Cristal Zuñiga; Jennifer Levering; Maciek R Antoniewicz; Michael T Guarnieri; Michael J Betenbaugh; Karsten Zengler
Journal:  Plant Physiol       Date:  2017-09-26       Impact factor: 8.340

4.  Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13C metabolic flux analysis.

Authors:  Jacqueline E Gonzalez; Christopher P Long; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2016-11-11       Impact factor: 9.783

5.  Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Adam M Feist; Bernhard O Palsson; Maciek R Antoniewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-18       Impact factor: 11.205

6.  13C metabolic flux analysis of three divergent extremely thermophilic bacteria: Geobacillus sp. LC300, Thermus thermophilus HB8, and Rhodothermus marinus DSM 4252.

Authors:  Lauren T Cordova; Robert M Cipolla; Adti Swarup; Christopher P Long; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-10-14       Impact factor: 9.783

7.  Metabolism of the fast-growing bacterium Vibrio natriegens elucidated by 13C metabolic flux analysis.

Authors:  Christopher P Long; Jacqueline E Gonzalez; Robert M Cipolla; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-10-16       Impact factor: 9.783

8.  13C metabolic flux analysis of microbial and mammalian systems is enhanced with GC-MS measurements of glycogen and RNA labeling.

Authors:  Christopher P Long; Jennifer Au; Jacqueline E Gonzalez; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2016-06-22       Impact factor: 9.783

9.  Optimal tracers for parallel labeling experiments and 13C metabolic flux analysis: A new precision and synergy scoring system.

Authors:  Scott B Crown; Christopher P Long; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2016-06-04       Impact factor: 9.783

10.  High-resolution 13C metabolic flux analysis.

Authors:  Christopher P Long; Maciek R Antoniewicz
Journal:  Nat Protoc       Date:  2019-08-30       Impact factor: 13.491

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