| Literature DB >> 27042310 |
Dominic A W Henry1, Judith M Ament2, Graeme S Cumming3.
Abstract
BACKGROUND: The movement patterns of many southern African waterfowl are typified by nomadism, which is thought to be a response to unpredictable changes in resource distributions. Nomadism and the related movement choices that waterfowl make in arid environments are, however, poorly understood. Tracking multiple individuals across wide spatiotemporal gradients offers one approach to elucidating the cues and mechanisms underpinning movement decisions. We used first-passage time (FPT) to analyse high spatial and temporal resolution telemetry data for Red-billed Teal and Egyptian Geese across a 1500 km geographical gradient between 2008 and 2014. We tested the importance of several environmental variables in structuring movement patterns, focusing on two competing hypotheses: (1) whether movements are driven by resource conditions during the current period of habitat occupation (reactive movement hypothesis), or (2) whether movements are structured by shifts in the magnitude and direction of environmental variables at locations prior to occupation (prescient movement hypothesis).Entities:
Keywords: Alopochen aegyptiaca; Anas erythrorhyncha; First-passage time; NDVI; Nomadic; Rainfall; Southern Africa; Waterfowl
Year: 2016 PMID: 27042310 PMCID: PMC4818463 DOI: 10.1186/s40462-016-0073-x
Source DB: PubMed Journal: Mov Ecol ISSN: 2051-3933 Impact factor: 3.600
Details of individual GPS-tagged Egyptian Geese (EG) and Red-billed Teal (RBT)
| PTT | Spp | Site | Start | End | ND | TF | FD | NS | UDs | UDA (km2) | UDD (days) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 77092 | RBT | STR | 3/12/2008 | 3/26/2009 | 379 | 1804 | 4.8 | 5 | 31 | 2.24 ± 2.42 | 15.8 ± 23 |
| 77093 | RBT | STR | 3/12/2008 | 9/7/2008 | 179 | 993 | 5.5 | 3 | 12 | 1.95 ± 1.24 | 22.1 ± 20.7 |
| 77098 | RBT | STR | 3/14/2008 | 11/24/2009 | 620 | 3550 | 5.7 | 5 | 44 | 2.26 ± 2.18 | 20.6 ± 30.8 |
| 77099 | RBT | STR | 3/14/2008 | 5/15/2009 | 427 | 1859 | 4.4 | 4 | 23 | 3.41 ± 3.27 | 20.8 ± 25.2 |
| 77100 | RBT | STR | 3/14/2008 | 4/16/2009 | 398 | 2046 | 5.1 | 6 | 42 | 1.95 ± 1.32 | 14.5 ± 16.9 |
| 77101 | RBT | BAR | 4/9/2008 | 9/28/2008 | 172 | 740 | 4.3 | 3 | 11 | 3.42 ± 2.19 | 22.2 ± 22.6 |
| 77102 | RBT | BAR | 4/10/2008 | 4/20/2010 | 740 | 4155 | 5.6 | 4 | 82 | 1.54 ± 0.98 | 13.5 ± 24 |
| 77103 | RBT | MAN | 5/5/2008 | 8/24/2008 | 111 | 610 | 5.5 | 3 | 33 | 2.57 ± 2.73 | 6 ± 7.6 |
| 77104 | RBT | MAN | 5/5/2008 | 1/25/2009 | 265 | 1431 | 5.4 | 3 | 43 | 1.79 ± 1.74 | 10.3 ± 21.3 |
| 77106 | RBT | MAN | 5/6/2008 | 7/25/2009 | 445 | 2587 | 5.8 | 7 | 34 | 2.3 ± 2.09 | 19.4 ± 25.2 |
| 77108 | RBT | MAN | 5/6/2008 | 8/29/2008 | 115 | 644 | 5.6 | 4 | 22 | 2.67 ± 3.1 | 10.5 ± 11.9 |
| 77109 | RBT | MAN | 5/7/2008 | 12/24/2008 | 231 | 1307 | 5.7 | 4 | 37 | 1.88 ± 1.12 | 12.3 ± 23.2 |
| 77112 | RBT | BAR | 6/7/2008 | 5/15/2009 | 342 | 1843 | 5.4 | 3 | 23 | 2.15 ± 2.49 | 21.8 ± 43.6 |
| 77115 | RBT | BAR | 10/11/2008 | 7/15/2009 | 277 | 1429 | 5.2 | 4 | 20 | 2.16 ± 1.37 | 11.6 ± 15 |
| 77094 | EG | STR | 1/12/2008 | 5/9/2008 | 118 | 1218 | 10.3 | 4 | 15 | 1.99 ± 1.14 | 12.1 ± 9.6 |
| 77094a | EG | STR | 8/20/2008 | 5/1/2009 | 254 | 2686 | 10.6 | 3 | 9 | 2.59 ± 2.29 | 21.2 ± 34.3 |
| 77095 | EG | STR | 1/12/2008 | 1/3/2009 | 357 | 3397 | 9.5 | 5 | 32 | 2.29 ± 1.93 | 15.5 ± 22.3 |
| 7711702 | EG | JOZ | 5/4/2012 | 9/20/2012 | 139 | 1669 | 12.0 | 5 | 13 | 2.25 ± 1.24 | 13.3 ± 13.9 |
| 7711802 | EG | STR | 1/17/2009 | 10/11/2010 | 632 | 6453 | 10.2 | 5 | 58 | 2.56 ± 2.93 | 18.1 ± 31.3 |
| 7712002 | EG | JOZ | 5/4/2012 | 5/24/2013 | 385 | 4317 | 11.2 | 2 | 86 | 3.12 ± 3.06 | 11.5 ± 17.7 |
| 7712002a | EG | JOZ | 6/9/2013 | 1/31/2014 | 236 | 2592 | 11.0 | 3 | 43 | 1.93 ± 1.6 | 10.9 ± 15.9 |
| 7712102 | EG | JOZ | 5/5/2012 | 9/3/2012 | 121 | 1309 | 10.8 | 3 | 4 | 2.21 ± 1.19 | 30.5 ± 19.8 |
| 7712202 | EG | BAR | 10/23/2008 | 5/30/2009 | 219 | 2123 | 9.7 | 5 | 37 | 1.87 ± 1.7 | 8.5 ± 13.4 |
| 7712302 | EG | STR | 12/5/2008 | 6/2/2009 | 179 | 1756 | 9.8 | 4 | 7 | 2.53 ± 1.26 | 23.9 ± 30.7 |
| 77125 | EG | MAN | 5/7/2008 | 2/21/2010 | 655 | 6965 | 10.6 | 5 | 120 | 2.29 ± 2.98 | 11.6 ± 24.1 |
| 77125a | EG | MAN | 4/17/2010 | 5/31/2011 | 409 | 3689 | 9.0 | 3 | 60 | 2.68 ± 2.76 | 15.6 ± 21.4 |
| 77126 | EG | MAN | 5/7/2008 | 12/26/2008 | 233 | 2682 | 11.5 | 5 | 29 | 2.33 ± 2.86 | 12.6 ± 16.5 |
| 77127 | EG | BAR | 6/7/2008 | 5/10/2010 | 702 | 6351 | 9.0 | 6 | 54 | 2.7 ± 3.32 | 17.3 ± 26.9 |
| 77128 | EG | BAR | 6/22/2008 | 6/6/2009 | 349 | 3551 | 10.2 | 3 | 31 | 1.81 ± 1.9 | 10.4 ± 25.4 |
| 77128a | EG | BAR | 8/15/2009 | 5/25/2010 | 283 | 2551 | 9.0 | 3 | 64 | 1.81 ± 1.9 | 6.5 ± 14.3 |
| 77128b | EG | BAR | 9/25/2010 | 5/6/2011 | 223 | 1998 | 9.0 | 3 | 28 | 1.67 ± 0.96 | 5.7 ± 12.1 |
| 77128c | EG | BAR | 7/31/2011 | 12/2/2011 | 124 | 653 | 5.3 | 4 | 16 | 2.09 ± 1.4 | 8.8 ± 11.5 |
| 77129 | EG | BAR | 6/7/2008 | 5/15/2009 | 342 | 3491 | 10.2 | 5 | 61 | 2.13 ± 1.73 | 9.6 ± 17.5 |
| 77130 | EG | BAR | 11/9/2008 | 9/19/2009 | 314 | 2489 | 7.9 | 5 | 76 | 2.2 ± 1.76 | 8.6 ± 12.6 |
| 77130a | EG | BAR | 10/4/2009 | 6/4/2010 | 243 | 2140 | 8.8 | 5 | 78 | 1.86 ± 1.5 | 6.5 ± 10.8 |
| 77132 | EG | BAR | 6/7/2008 | 5/30/2009 | 357 | 2601 | 7.3 | 3 | 35 | 2.01 ± 1.94 | 15.5 ± 25.4 |
| 77132a | EG | BAR | 8/13/2009 | 4/14/2010 | 244 | 2090 | 8.6 | 2 | 12 | 2.15 ± 0.46 | 14.8 ± 27.3 |
| 7713301 | EG | STR | 12/4/2008 | 4/27/2009 | 144 | 1506 | 10.5 | 5 | 40 | 1.83 ± 1.2 | 4 ± 5.1 |
| 7713302 | EG | JOZ | 5/4/2012 | 2/19/2013 | 291 | 3009 | 10.3 | 3 | 27 | 2.81 ± 2.17 | 15.7 ± 23 |
| 77134 | EG | STR | 12/1/2008 | 7/29/2010 | 605 | 5330 | 8.8 | 4 | 19 | 3.28 ± 2.47 | 24.2 ± 28.8 |
| 77134a | EG | STR | 8/19/2010 | 5/2/2011 | 256 | 2561 | 10.0 | 5 | 17 | 2.04 ± 2.16 | 19.2 ± 29.9 |
| 77134b | EG | STR | 7/22/2011 | 4/12/2012 | 265 | 2401 | 9.1 | 3 | 8 | 2.08 ± 1.66 | 47.1 ± 46.2 |
| 77135 | EG | STR | 12/1/2008 | 2/8/2011 | 799 | 8522 | 10.7 | 4 | 107 | 2.5 ± 2.82 | 11.5 ± 18 |
PTT, transmitter identity; BAR, Barberspan; STR, Strandfontein; MAN, Lake Manyame; JOZ, Jozini Dam. Start and end date refers to the time period of tracking data used in the study (ND is the total tracking duration in days). Total fixes (TF) are the number of relocations recorded over the study period, while mean fixes per day (FD) are the total number of relocations divided by the number of days the transmitter was active. The remaining columns contain data from the results of the FPT analysis. NS, number of movement segments per track; UDs, number of utilisation distributions derived from all segments; UDA, mean (± sd) area of utilisation distributions; UDD, mean (± sd) number of days spent in each utilisation distribution polygon
Fig. 1Five sequential steps which illustrate the analytical processes carried out on all birds. The movement path in this example was taken from a Red-Billed Teal (77115) tagged in Barberspan. a) The full movement path of the individual. b) The output of the first-passage time (FPT) procedure which identifies the scale at which movements are clustered. The scale corresponds to the radius at which the variance of log(FPT) is at a maximum. c) A graph of the magnitude of FPT at each GPS fix. The five colours each represent a movement segment identified by the Lavielle segmentation process. The red and black segments illustrate areas in which movements are highly clustered and non-linear. d) The initial movement path colour coded according to the corresponding segment from step c. The asterisks indicate the location of the two highly clustered movement segments (red and black). e) The utilisation distributions polygons derived from applying kernel density estimators to movement paths from each segment. Each polygon represents a sampling unit in the statistical analysis where mean FPT and environmental variables were measured
Details of environmental variables used as predictors in the analysis of first-passage time (FPT) of two waterfowl species in southern Africa
| Source | Units | Spatial resolution | Temporal resolution | Earth Engine Layer | ||
|---|---|---|---|---|---|---|
| NDVI | Normalised difference vegetation index NDVI = (NIR – R)/(NIR + R) | MODIS terra | 250 m | 16-day composite | MODIS/MCD43A4_NDVI | |
| mNDWI | Modified normalised difference water index mNDWI = (G-MIR)/(G + MIR) | MODIS terra | 250 m | 16-day composite | MODIS/MCD43A4 | |
| Precip | Rainfall | TRMM | mm/h | 0.25° | 3 hourly | TRMM/3B42 |
| Temp | Land surface temperature | MODIS | Kelvin (Convert to °C) | 1 km | Daily | MODIS/MYD11A1 |
| Elev | Elevation | NASA | Meters above sea level | 0.9 km | N/A | CGIAR/SRTM90_V4 |
Candidate set of generalised linear mixed models used to investigate the relationship between mean first-passage time (mFPTRmax) and environmental variables of Egyptian Geese and Red-billed Teal. Individual birds (ID) were added as a random effect to all models. See Table 2 and text in Methods for derivation of environmental predictor variables
| Model | Model formula | ||
|---|---|---|---|
| 1 | Food quantity | mFPTRmax ~ NDVIt + (1|ID) | |
| 2 | Food quality (16 day) | mFPTRmax ~ ΔNDVI t-16 + (1|ID) | |
| 3 | Food quality (32 day) | mFPTRmax ~ ΔNDVI t-32 + (1|ID) | |
| 4 | Wetland cover | mFPTRmax ~ mNDWIt + (1|ID) | |
| 5 | Wetland cover change (16 day) | mFPTRmax ~ ΔmNDWIt-16 + (1|ID) | |
| 6 | Wetland cover change (32 day) | mFPTRmax ~ ΔmNDWI t-32 + (1|ID) | |
| 7 | Precipitation | mFPTRmax ~ Precipt + (1|ID) | |
| 8 | Precipitation (16 day) | mFPTRmax ~ ΔPrecipt-16 + (1|ID) | |
| 9 | Precipitation (32 day) | mFPTRmax ~ ΔPrecipt-32 + (1|ID) | |
| 10 | Site | mFPTRmax ~ site + (1|ID) | |
| 11 | Temperature & elevation | mFPTRmax ~ Temp + Elev + (1|ID) | |
| RM hypothesis:a | |||
| 12 (16) | Food quantity, wetland cover & precipitation (+ temperature & elevation, site) | mFPTRmax ~ NDVIt + mNDWIt + Precipt + (1|ID) | |
| 13 (17) | Food quantity & wetland cover (+ temperature & elevation, site) | mFPTRmax ~ NDVIt + mNDWIt + (1|ID) | |
| 14 (18) | Food quantity & precipitation (+ temperature & elevation, site) | mFPTRmax ~ NDVIt + Precipt + (1|ID) | |
| 15 (19) | Wetland cover & precipitation (+ temperature & elevation, site) | mFPTRmax ~ mNDWIt + Precipt + (1|ID) | |
| PM hypothesis:b | |||
| 20 (24) | 16 day Lag | Change in food quality, wetland cover & precipitation (+ site) | mFPTRmax ~ ΔNDVI t-16 + ΔmNDWI t-16 + ΔPrecipt-16 + (1|ID) |
| 21 (25) | Change in food quality & wetland cover (+ site) | mFPTRmax ~ ΔNDVI t-16 + ΔmNDWI t-16 + (1|ID) | |
| 22 (26) | Change in food quality & precipitation (+ site) | mFPTRmax ~ ΔNDVI t-16 + ΔPrecipt-16 + (1|ID) | |
| 23 (27) | Change in wetland cover change & precipitation (+ site) | mFPTRmax ~ ΔmNDWI t-16 + ΔPrecipt-16 + (1|ID) | |
| 28 (32) | 32 day Lag | Change in food quality, wetland cover & precipitation (+ site) | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + ΔPrecipt-32 + (1|ID) |
| 29 (33) | Change in food quality & wetland cover (+ site) | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + (1|ID) | |
| 30 (34) | Change in food quality & precipitation (+ site) | mFPTRmax ~ ΔNDVI t-32 + ΔPrecipt-32 + (1|ID) | |
| 31 (35) | Change in wetland cover change & precipitation (+ site) | mFPTRmax ~ ΔmNDWI t-32 + ΔPrecipt-32 + (1|ID) | |
| 36 | Null | mFPTRmax ~ 1 + (1|ID) | |
RM reactive movement; PM prescient movement
aModels numbers in parentheses comprise of the same set of environmental predictors with extra addition of site, temp and elevation as a predictor variables
bModels numbers in parentheses comprise of the same set of environmental predictors with extra addition of site as a predictor variable
Fig. 2Curves of individual Egyptian Geese showing the variance in log first-passage time against circle radius. Panels correspond to individuals tagged at 4 different wetland sites. PTT, transmitter identity; BAR, Barberspan; STR, Strandfontein; MAN, Lake Manyame; JOZ, Jozini Dam
Fig. 3Curves of individual Red-Billed Teal showing the variance in log first-passage time against circle radius. Panels correspond to individuals tagged at 3 different wetland sites. PTT, transmitter identity; BAR, Barberspan; STR, Strandfontein; MAN, Lake Manyame
Comparisons of the top models (∆AICc < 20) of first-passage time as a function environmental variables of two waterfowl species in southern Africa
| Model | K | AICc | ΔAICc | AICc Wt | Cum Wt | |
|---|---|---|---|---|---|---|
| Egyptian Geese | ||||||
| 32 | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + ΔPrecipt-32 + site + (1|ID) | 9 | 1979.25 | 0.00 | 0.43 | 0.43 |
| 34 | mFPTRmax ~ ΔNDVI t-32 + ΔPrecipt-32 + site + (1|ID) | 8 | 1979.39 | 0.14 | 0.40 | 0.83 |
| 30 | mFPTRmax ~ ΔNDVI t-32 + ΔPrecipt-32 + (1|ID) | 5 | 1982.95 | 3.70 | 0.07 | 0.90 |
| 28 | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + ΔPrecipt-32 + (1|ID) | 6 | 1983.44 | 4.19 | 0.05 | 0.95 |
| 19 | mFPTRmax ~ mNDWIt + Precipt + site + (1|ID) | 10 | 1984.52 | 5.27 | 0.03 | 0.98 |
| 16 | mFPTRmax ~ NDVIt + mNDWIt + Precipt + site + (1|ID) | 11 | 1986.00 | 6.75 | 0.01 | 1.00 |
| 15 | mFPTRmax ~ mNDWIt + Precipt + (1|ID) | 5 | 1992.27 | 13.02 | 0.00 | 1.00 |
| Red-billed Teal | ||||||
| 34 | mFPTRmax ~ ΔNDVI t-32 + ΔPrecipt-32 + site + (1|ID) | 7 | 833.87 | 0.00 | 0.38 | 0.38 |
| 26 | mFPTRmax ~ ΔNDVI t-16 + ΔPrecipt-16 + site + (1|ID) | 7 | 834.79 | 0.92 | 0.24 | 0.62 |
| 32 | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + ΔPrecipt-32 + site + (1|ID) | 8 | 835.21 | 1.34 | 0.19 | 0.82 |
| 24 | mFPTRmax ~ ΔNDVI t-16 + ΔmNDWI t-16 + ΔPrecipt-16 + site + (1|ID) | 8 | 836.83 | 2.95 | 0.09 | 0.90 |
| 30 | mFPTRmax ~ ΔNDVI t-32 + ΔPrecipt-32 + (1|ID) | 5 | 837.70 | 3.83 | 0.06 | 0.96 |
| 28 | mFPTRmax ~ ΔNDVI t-32 + ΔmNDWI t-32 + ΔPrecipt-32 + (1|ID) | 6 | 839.54 | 5.67 | 0.02 | 0.98 |
| 22 | mFPTRmax ~ ΔNDVI t-16 + ΔPrecipt-16 + (1|ID) | 5 | 840.40 | 6.53 | 0.01 | 0.99 |
| 20 | mFPTRmax ~ ΔNDVI t-16 + ΔmNDWI t-16 + ΔPrecipt-16 + (1|ID) | 6 | 842.45 | 8.57 | 0.01 | 1.00 |
| 35 | mFPTRmax ~ ΔmNDWI t-32 + ΔPrecipt-32 + site + (1|ID) | 7 | 852.07 | 18.19 | 0.00 | 1.00 |
Models are ranked based on differences in the corrected Akaike’s Information Criteria (ΔAICc) Akaike weights (AICc Wt). K is the number of estimated parameters and Cum Wt is the cumulative weight of sequential models. Individual birds (ID) were added as a random effect to all models
Summary of the generalised mixed models with the highest support in the analysis of mean first-passage time (mFPTRmax) as a function of environmental variables
| Parameter | β | Lower CI | Upper CI | SE | R2 GLMM(m) | R2 GLMM(c) | VIF (kappa) | |
|---|---|---|---|---|---|---|---|---|
| Egyptian Geese | 9.4 % | 17.2 % | 3.64 | |||||
| (Intercept) | 1.34 | 1.24 | 1.45 | 0.06 | ||||
| ΔNDVI t-32 | 0.04 | 0.01 | 0.06 | 0.02 | ||||
| ΔPrecipt-32 | 0.12 | 0.09 | 0.14 | 0.02 | ||||
| Site : JOZ vs. BAR | 0.04 | −0.14 | 0.23 | 0.11 | ||||
| Site : MAN vs. BAR | −0.13 | −0.33 | 0.07 | 0.12 | ||||
| Site : STR vs. BAR | 0.25 | 0.10 | 0.40 | 0.09 | ||||
| No. of observations: 1165, random effect groups: ID, 29 | ||||||||
| Red-billed Teal | 11.3 % | 13.1 % | 4.42 | |||||
| (Intercept) | 1.59 | 1.47 | 1.71 | 0.07 | ||||
| ΔNDVI t-32 | −0.06 | −0.11 | −0.01 | 0.03 | ||||
| ΔPrecipt-32 | 0.16 | 0.12 | 0.21 | 0.03 | ||||
| Site : MAN vs. BAR | −0.12 | −0.27 | 0.03 | −0.11 | ||||
| Site : STR vs. BAR | 0.24 | 0.08 | 0.39 | 0.09 | ||||
| No. of observations: 445, random effect groups: ID, 14 | ||||||||
R2 values are measures of model fit based on fixed effects only (marginal variance, R2 GLMM(m)) and on the full model including random effects (conditional variance, R2 GLMM(c))
Fig. 4Three panels which represent a gradient of mean values of mean first-passage time (mFPTRmax) and environmental variables within utilisation distribution polygons. These data illustrate the positive relationship between FPT and a 32-day lag in NDVI and precipitation (e.g. dark red, dark green and dark blue polygons represent sites at which FPT and environmental variables were strongly positively correlated). ΔNDVIt-32, the difference between mean NDVI within a polygon at time t and t-32 days; ΔPrecipt-32, the difference between precipitation within a polygon at time t and t-32 days measured in mm. Note that mFPTRmax was measured in hours and has been logged transformed