Literature DB >> 27042096

Polymorphisms of vitamin D receptor gene TaqI susceptibility of prostate cancer: a meta-analysis.

Xiawei Fei1, Nannan Liu2, Huifeng Li1, Yanting Shen3, Jianming Guo4, Zhenqi Wu1.   

Abstract

OBJECTIVE: Many studies have investigated the association of the vitamin D receptor gene TaqI polymorphism with prostate cancer (PCa) risk. However, the evidence is inadequate to draw robust conclusions. To shed light on these inconclusive findings, we conducted a meta-analysis.
MATERIALS AND METHODS: We searched PubMed for eligible articles. The relevant data were abstracted by two independent reviewers with the Stata 11.0 software.
RESULTS: A total of 27 studies were included. The pooled outcomes indicated that the TaqI genetic polymorphisms were significantly associated with the risk of PCa (T vs t allele: odds ratio [OR] =1.11, 95% confidence interval [CI] =1.03-1.21, P=0.008; TT vs tt: OR =1.19, 95% CI =1.01-1.42, P=0.040; TT + Tt vs tt: OR =1.18, 95% CI =1.02-1.38, P=0.031), especially in the Asian population (T vs t allele: OR =1.11, 95% CI =1.03-1.21, P=0.008; TT/Tt vs tt: OR =1.93, 95% CI =1.02-3.66, P=0.043). In the tumor stage stratified analyses, the pooled results showed no significant difference in genetic polymorphisms between the local tumor group and the control group or between the local tumor group and the advanced tumor group. However, the genotypes TT and TT/Tt were significantly higher in the advanced PCa group compared to the control group (T vs t allele: OR =1.20, 95% CI =1.01-1.42, P=0.040; TT vs tt: OR =1.34, 95% CI =1.08-1.67, P=0.009; TT/Tt vs tt: OR =1.28, 95% CI =1.05-1.56, P=0.015).
CONCLUSION: The vitamin D receptor gene TaqI allele polymorphism might be associated with a PCa risk, especially in Asians, which might provide new clues for the pathogenesis research and clinical diagnosis of PCa in the future.

Entities:  

Keywords:  meta-analysis; polymorphisms; prostate cancer; vitamin D receptor

Year:  2016        PMID: 27042096      PMCID: PMC4780196          DOI: 10.2147/OTT.S99428

Source DB:  PubMed          Journal:  Onco Targets Ther        ISSN: 1178-6930            Impact factor:   4.147


Introduction

Prostate cancer (PCa) is the second-most frequently diagnosed cancer in males around the world. It is also one of the leading causes of cancer death among men of all races.1 Its etiology has remained unclear, and few risk factors have been established for PCa other than older age, a positive family history, and race.2 Some previous epidemiological studies suggested that low serum levels of the vitamin D receptor (VDR) might be a risk factor for PCa.3,4 Such low levels could be recognized by 1 alpha, 25-dihydroxyvitamin D3 – active form of vitamin D – and its analogs, and through the interaction between these substances, the tumor cell growth cycle could be fixed in the G1 phase, leading to stagnation of the tumor cells.5 However, the mechanism responsible for reduced VDR expression is still not known. Recently, some studies have shown that VDR gene polymorphisms have functional significance for the stability of mRNA and the protein translation efficiency and may be responsible for the reduced VDR level.6,7 The human VDR gene is located on chromosome 12q13.11 and consists of 14 exons spanning ~75 kb.8,9 It is highly polymorphic with at least 618 variants reported, most of which are either undetectable or present at a low frequency in the general population, according to the dbSNP database.10 TaqI is one of the most extensively studied SNP and is located in exon 9 of the VDR gene. Several previous studies have suggested that TaqI might alter VDR mRNA levels through regulation of mRNA stability and be associated with a PCa risk.11 A number of case–control studies were conducted to investigate the association between the TaqI and the risk of PCa. However, existing evidence is inadequate to draw robust conclusions because the results are not consistent and most studies were generally small. Three published meta-analyses have been reported, but no positive conclusions were given.11–13 Subsequently, four new studies have provided additional data on the association between TaqI and PCa risk.14–17 Therefore, to shed light on these inconclusive findings, we used the new data to conduct a meta-analysis to revisit the association between the VDR TaqI polymorphism and the risk and characteristics of PCa.

Materials and methods

Search strategy

We searched the PubMed and Web of Science databases up to September 8, 2015, for relevant studies about the association of VDR gene TaqI polymorphism and PCa without language restrictions. The search terms included polymorphism, vitamin D receptor, vitamin D3 receptor, 1,25-dihydroxyvitamin D3 receptor, calcitriol receptor, VDR, and PCa, prostate neoplasm, prostate tumor, prostate carcinoma, or prostatic neoplasm.

Inclusion/exclusion criteria

The title, abstract, and full text of the candidate studies were independently screened by two reviewers. A study was included when all of the following criteria were met: 1) A nonfamilial case–control and cohort study that examined the association between VDR polymorphism and PCa risk with genotyping data for TaqI was included. 2) A study that used men with benign prostatic hyperplasia was included, but a study based on family or pedigree was excluded because of consideration of disease specificity and genetic linkage. 3) A study on localized PCa: confined within the prostate, stages T1–T2 or stages A–B; advanced PCa: extraprostatic or metastatic cancer involving lymph nodes or other organs, stages T3–T4 or stages C–D was included. 4) A study that had complete data or data that could be used to calculate an odds ratio (OR) and a 95% confidence interval (95% CI) was included. 5) A study that used men with benign prostatic hyperplasia as a control was included. 6) A case-only study or a study that had incomplete data for the control group was excluded.

Data extraction

Information was carefully extracted from all eligible publications by two independent reviewers (Fei and Liu), based on the aforementioned inclusion criteria. Any disagreements were arbitrated by discussion with a third reviewer (Wu). The following data were collected from each study: the first author’s surname, the year of publication, the study location, the ethnicity, the source of the controls, the laboratory methods used to detect VDR TaqI polymorphism, and the number of cases and controls. The ethnic groups were mainly defined as Caucasian, Asian, and African. For analysis of the risk factors associated with PCa, we divided the clinical stages and Gleason score into the following two groups: a local group and an advanced group as described previously, Gleason score <7 and ≥7 groups.

Quality assessment

We used the Newcastle–Ottawa Scale (NOS) to assess the quality of each eligible study. When an item was met, the study got one point. The NOS runs from zero to nine points. A study was considered high quality if it received more than four points.18

Statistical analysis

The strength of the association between TaqI T/t polymorphism and the risk of PCa was indicated by an OR with a 95% CI. The statistical significance of the pooled OR was assessed with the Z-test and a P-value of <0.05 was considered significant. A chi-square-based Q-test was conducted to measure the heterogeneity of eligible studies, and the heterogeneity was considered significant if the P-value for heterogeneity test was <0.05. Subgroup analyses were conducted to identify the possible variables or characteristics that moderated the obtained results. A sensitivity analysis in which one study was excluded at a time was conducted to evaluate the influence of an individual study based on the results. Begg’s funnel plot and Egger’s regression test were used to evaluate the publication bias (no publication bias was indicated by a two-sided P-value ≥0.05). All analyses were conducted using the Stata version 11.0 software (StataCorp LP, College Station, TX, USA), and a two-sided P-value ≥0.05 indicated no significance.

Results

Literature search

The study selection process is shown in Figure 1. The primary literature search identified 507 studies. After the titles and abstracts were screened, 387 studies were excluded; 78 were reviews, meta-analyses, and letters. The full texts of the remaining 42 studies were evaluated further. As a result, 27 studies were included in the meta-analysis.3,4,6,14–17,19–38
Figure 1

Study flowchart for the process of selecting the final 27 studies.

Characters and assessments of involved studies

The 27 eligible studies included 12,276 cases and 13,506 controls and were assessed by the NOS (Table S1). Each had a score of >4, which means that all the studies had high quality. The distribution of the VDR gene TaqI polymorphism genotype and allele is shown in Tables 1 and S2.
Table 1

Detailed association of VDR TaqI polymorphism with PCa risk in each individual study

StudyOR (95% CI)
T allele vs t alleleTT vs ttTT vs TtTT vs (Tt/tt)(TT/Tt) vs tt
Taylor et al61.24 (0.88–1.75)2.36 (1.01–5.53)0.67 (0.39–1.54)0.86 (0.51–1.47)3.06 (1.41–6.63)
Kibel et al191.37 (0.73–2.57)1.69 (0.48–5.93)1.43 (0.55–3.70)1.50 (0.62–3.62)1.41 (0.44–4.51)
Ma et al201.04 (0.86–1.26)1.09 (0.72–1.63)1.06 (0.80–1.40)1.06 (0.81–1.39)1.05 (0.72–1.53)
Correa-Cerro et al211.12 (0.75–1.68)0.87 (0.37–2.07)2.00 (1.09–3.68)1.63 (0.92–2.89)0.60 (0.27–1.34)
Watanabe et al221.09 (0.64–1.86)1.50 (0.30–7.60)1.00 (0.54–1.87)1.05 (0.58–1.91)1.50 (0.30–7.57)
Furuya et al230.86 (0.45–1.64)0.72 (0.34–1.52)0.76 (0.36–1.59)
Habuchi et al241.22 (0.84–1.78)1.04 (0.17–6.31)1.28 (0.85–1.94)1.27 (0.85–1.91)0.99 (0.16–5.96)
Blazer et al250.97 (0.66–1.42)1.06 (0.49–2.31)0.67 (0.37–1.23)0.77 (0.43–1.35)1.33 (0.67–2.67)
Hamasaki et al31.82 (1.09–3.03)4.00 (0.83–19.35)1.55 (0.84–2.84)1.75 (0.98–3.12)3.62 (0.75–17.39)
Medeiros et al261.11 (0.82–1.49)1.54 (0.80–2.94)0.72 (0.46–1.14)0.86 (0.56–1.33)1.87 (1.04–3.37)
Gsur et al270.78 (0.58–1.05)0.57 (0.30–1.06)0.90 (0.58–1.39)0.80 (0.53–1.21)0.60 (0.34–1.07)
Tayeb et al280.90 (0.48–1.68)0.80 (0.23–2.83)0.93 (0.35–2.51)0.89 (0.35–2.27)0.83 (0.27–2.55)
Tayeb et al294.54 (1.51–13.66)3.91 (0.43–35.60)7.42 (1.58–34.90)6.25 (1.69–23.15)2.65 (0.29–23.82)
Maistro et al300.74 (0.55–1.01)0.63 (0.33–1.23)0.63 (0.41–0.99)0.63 (0.41–0.96)0.80 (0.43–1.49)
Bodiwala et al311.07 (0.85–1.35)1.11 (0.68–1.82)1.17 (0.82–1.67)1.15 (0.82–1.62)1.01 (0.65–1.58)
Oakley-Girvan et al320.92 (0.74–1.16)0.89 (0.55–1.44)0.86 (0.61–1.20)0.86 (0.63–1.19)0.97 (0.62–1.51)
Huang et al331.48 (0.76–2.88)1.51 (0.76–3.01)
John et al341.19 (0.98–1.45)1.48 (1.00–2.21)1.07 (0.80–1.44)1.17 (0.88–1.54)1.43 (0.99–2.05)
Andersson et al350.99 (0.71–1.36)0.98 (0.52–1.88)0.96 (0.58–1.57)0.97 (0.61–1.53)1.01 (0.56–1.81)
Chaimuangraj et al361.01 (0.37–2.73)0.87 (0.30–2.55)0.93 (0.32–2.71)
Holick et al41.13 (0.95–1.33)1.15 (0.81–1.63)1.36 (1.05–1.75)1.30 (1.02–1.65)0.97 (0.70–1.33)
Onen et al371.38 (0.98–1.95)1.81 (0.87–3.78)1.46 (0.88–2.40)1.53 (0.96–2.45)1.49 (0.75–2.96)
Onsory et al381.48 (0.96–2.28)2.30 (0.72–7.37)1.54 (0.86–2.74)1.62 (0.93–2.83)1.88 (0.61–5.82)
Rowland et al141.12 (1.00–1.26)1.283 (1.00–1.64)1.09 (0.92–1.28)1.13 (0.97–1.32)1.23 (0.98–1.55)
Hu et al150.77 (0.39–1.52)0.22 (0.20–2.45)0.96 (0.44–2.11)0.84 (0.40–1.76)0.22 (0.02–2.45)
Yousaf et al161.47 (0.84–2.57)2.84 (0.92–8.78)0.30 (0.12–0.75)0.90 (0.44–1.83)3.68 (1.22–11.10)
Jingwi et al171.53 (1.18–1.97)2.01 (1.12–3.59)1.68 (1.17–2.40)1.74 (1.24–2.44)1.58 (0.91–2.76)

Abbreviations: VDR, vitamin D receptor; PCa, prostate cancer; OR, odds ratio; CI, confidence interval.

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk

The pooled results of 27 relevant studies on the correlation between TaqI polymorphisms and the risk of PCa are presented in Table 2 and Figure 2. The outcome indicated that TaqI genetic polymorphism was significantly associated with the risk of PCa (T vs t allele: OR =1.11, 95% CI =1.03–1.21, P=0.008; TT vs tt: OR =1.19, 95% CI =1.01–1.42, P=0.040; TT + Tt vs tt: OR =1.18, 95% CI =1.02–1.38, P=0.031).
Table 2

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk

GeneStudiesTest for overall effect
Heterogeneity
Public bias
OR (95% CI)Z-scoreP-valueI2P-valueBegg’s testEgger’s test
T vs t271.11 (1.03–1.21)2.640.00836.9%0.0290.4780.423
TT vs Tt271.07 (0.94–1.22)1.050.29649%0.0020.8350.550
TT vs tt241.19 (1.01–1.42)2.060.04034.4%0.0510.6730.724
TT vs (tt/Tt)261.10 (0.99–1.24)1.730.08441.5%0.0150.6920.949
(TT/Tt) vs tt241.18 (1.02–1.38)2.150.03131.4%0.0720.6730.460

Abbreviations: VDR, vitamin D receptor; PCa, prostate cancer; OR, odds ratio; CI, confidence interval.

Figure 2

ORs of prostate cancer associated with VDR TaqI polymorphisms.

Notes: (A) T vs t, (B) TT vs tt, and (C) (TT/Tt) vs tt. Weights are from random effects analysis.

Abbreviations: OR, odds ratio; VDR, vitamin D receptor; CI, confidence interval.

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk in different populations

A previous study showed that ethnicity was a primary risk factor for PCa.2 In order to draw attention to this point, an stratified analysis of ethnicity was performed,3,6,14–17,19–29,31–33,35–38 and the pooled results indicated that TaqI genetic polymorphism in the VDR gene was closely linked to the pathogenesis of PCa among Asian populations (T vs t allele: OR =1.11, 95% CI =1.03–1.21, P=0.008; TT/Tt vs tt: OR =1.93, 95% CI =1.02–3.66, P=0.043) (Table 3 and Figure 3). A sensitivity analyses indicated that an independent study by Jingwi et al was the principal reference for heterogeneity of TaqI polymorphism in the African population.17 After the exclusion of this study, the heterogeneity was effectively decreased or was eliminated, and the outcome showed that no statistical significance was found among African or Caucasian populations.
Table 3

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk in different populations

GeneStudiesTest for overall effect
Heterogeneity
Public bias
OR (95% CI)Z-scoreP-valueI2P-valueBegg’s testEgger’s test
Caucasian
 T vs t131.06 (0.97–1.17)1.310.19122.9%0.2120.5830.474
 TT vs Tt131.02 (0.86–1.21)0.240.89846.2%0.0340.8550.842
 TT vs tt131.14 (0.97–1.33)1.550.1222.1%0.4250.5830.737
 TT vs (tt/Tt)131.04 (0.90–1.21)0.550.57936.6%0.0900.3600.814
 (TT/Tt) vs tt141.13 (0.94–1.35)1.260.20828.6%0.1500.5110.648
African
 T vs t51.04 (0.85–1.28)0.42a0.676a0.0%0.9560.806a0.917a
 TT vs Tt50.97 (0.74–1.29)0.18a0.858a0.0%0.5580.221a0.854a
 TT vs tt51.22 (0.75–1.97)0.80a0.421a0.0%0.8440.806a0.935a
 TT vs (tt/Tt)51.01 (0.78–1.32)0.08a0.933a0.0%0.8050.462a0.781a
 (TT/Tt) vs tt61.32 (0.94–1.87)1.590.1120.0%0.8080.3680.366
Asian
 T vs t91.27 (1.06–1.52)2.560.0100.0%0.5270.1750.308
 TT vs Tt91.07 (0.81–1.43)0.490.62739.1%0.1070.0590.088
 TT vs tt61.44 (0.59–3.51)0.800.42659.7%0.0300.4520.969
 TT vs (tt/Tt)81.19 (0.96–1.47)1.580.1150.0%0.5170.0630.153
 (TT/Tt) vs tt61.93 (1.02–3.66)2.020.04311.8%0.3400.0540.067

Note:

Jingwi et al’s study17 was excluded.

Abbreviations: VDR, vitamin D receptor; PCa, prostate cancer; OR, odds ratio; CI, confidence interval.

Figure 3

ORs of prostate cancer associated with TaqI polymorphism in different populations.

Notes: (A) T vs t and (B) (TT/Tt) vs tt. Weights are from random effects analysis.

Abbreviations: OR, odds ratio; CI, confidence interval.

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk in different tumor stages and Gleason score

We also performed a stratified analysis based on the tumor stage and the Gleason score to delineate the association of VDR gene TaqI polymorphism with PCa risk in more detail. As shown in Table 4 and Figure 4, in the tumor stage stratified analysis, the pooled results showed no significant difference in the genetic polymorphism between local tumor group and the control group or between the local tumor group and the advanced tumor group. However, the genotypes TT and TT/Tt were significantly higher in the advanced PCa group compared to the control group (T vs t allele: OR =1.20, 95% CI =1.01–1.42, P=0.040; TT vs tt: OR =1.34, 95% CI =1.08–1.67, P=0.009; TT/Tt vs tt: OR =1.28, 95% CI =1.05–1.56, P=0.015).
Table 4

Meta-analysis of the association of VDR gene TaqI polymorphism with PCa risk in different tumor stages

StageStudiesTest for overall effect
Heterogeneity
Public bias
OR (95% CI)Z-scoreP-valueI2P-valueBegg’s testEgger’s test
Local vs control
 T vs t51.09 (0.95–1.25)1.180.2370.0%0.9390.8060.741
 TT vs tt21.26 (0.91–1.73)1.400.1600.0%0.635
 TT vs Tt50.97 (0.80–1.18)0.320.7520.0%0.9410.8060.213
 TT vs (tt/Tt)61.07 (0.88–1.31)0.680.4983.3%0.3951.0000.885
 (TT/Tt) vs tt41.16 (0.88–1.53)1.070.2870.0%0.4510.7340.442
Advanced vs control
 T vs t61.20 (1.01–1.42)2.050.04031.5%0.1990.4520.354
 TT vs tt41.34 (1.08–1.67)0.630.0090.0%0.7460.7340.216
 TT vs Tt61.15 (0.86–1.52)0.930.35245.6%0.1010.7070.799
 TT vs (tt/Tt)71.17 (0.89–1.54)1.140.25643.6%0.1000.3680.941
 (TT/Tt) vs tt61.28 (1.05–1.56)2.440.0150.0%0.8210.4200.189
Local vs advanced
 T vs t50.95 (0.82–1.10)0.650.5150.0%0.5360.4620.191
 TT vs tt21.02 (0.72–1.45)0.130.8960.0%0.663
 TT vs Tt50.76 (0.48–1.21)1.140.25532.9%0.2020.8060.575
 TT vs (tt/Tt)60.87 (0.62–1.21)0.840.40014.0%0.3250.2600.805
 (TT/Tt) vs tt41.01 (0.74–1.38)0.080.9380.0%0.6280.7340.054

Abbreviations: VDR, vitamin D receptor; PCa, prostate cancer; OR, odds ratio; CI, confidence interval.

Figure 4

ORs of TaqI polymorphism comparing advanced prostate cancer group with control group.

Notes: (A) T vs t, (B) TT vs tt, and (C) (TT/Tt) vs tt. Weights are from random effects analysis.

Abbreviations: OR, odds ratio; CI, confidence interval.

In the Gleason score stratified analysis, no statistically significant difference in the distribution of the allele and genotype of TaqI polymorphism was evident (TT/Tt vs tt: OR =1.28, 95% CI =0.52–3.13, P=0.584; TT vs Tt/tt: OR =0.79, 95% CI =0.45–1.37, P=0.396). However, the number of articles included15,27,30 was too little to draw a robust conclusion. Therefore, further relevant studies should be performed in the future.

Sensitivity analysis

Sensitivity analyses were performed by the sequential omission of individual studies for all subjects and stratified analyses. Except for the stratified analyses of the association between TaqI polymorphism and PCa risk in an African population, the corresponding pooled ORs were not materially altered in the other stratified analyses, indicating the robustness of the results of this meta-analysis.

Publication bias assessment

Begg’s funnel plot and Egger’s test were performed to assess the publication bias in the literature. No evidence of publication bias was found for all analyses. Egger’s and Begg’s tests were not performed for the Gleason stratified analyses and the stage stratified analyses of TT vs tt in the comparison of local tumor group with the control group and the local tumor group with the advanced tumor group due to the small number of included studies.

Discussion

Various factors contribute to the basic pathology of PCa. Clinical diagnosis of the disease is aided by prostate-specific antigen and biopsy, but none of these methods provide a definitive diagnosis and/or a credible assessment of progression of the disease.39,40 Recently, genetic susceptibility to cancer has been a focus of research by the scientific community. The development and progression of PCa are influenced by vitamin D synthesis.3 Therefore, the polymorphism of genes that encode key proteins involved in vitamin D synthesis and metabolism has been chosen as primary candidate genes for PCa susceptibility. Currently, a growing number of studies that have revealed polymorphic variants of the VDR gene were associated with the etiology of PCa. In this meta-analysis, we have analyzed the role of the VDR gene TaqI polymorphism in PCa, which is located in exon 9 and is responsible for the stability of the mRNA. We found that a variant TaqI allele (t) was significantly correlated with a reduced risk of PCa, suggesting it might be a protective factor for PCa, which was consistent with a previous meta-analysis.10 Ethnicity is an important biological factor that might influence VDR function through gene–gene interaction. In our analysis, the association of TaqI polymorphism with a PCa risk was observed in the Asian population, which was consistent with Yin et al10 Although the underlying mechanism for the observed ethnic difference in the PCa risk must still be elucidated, a tumor-protective effect of the TaqI t allele in Asians was significantly more pronounced than in the other two ethnic groups, Caucasians and Africans. In the Asian population, a tt genotype carrier had a lower risk of PCa, compared to a TT or TT/Tt genotype. We also performed tumor stage and Gleason score striated analyses. Differently from Yin et al’s study,10 we obtained some positive results. We found that the t allele and the tt genotype could reduce the PCa risk when compared with the T allele, TT genotype, or TT/Tt genotype, indicating that variant the TaqI t allele might indeed be associated with disease progression. However, the Gleason score striated analysis indicated no association between TaqI polymorphism and PCa risk.

Study limitations

Although our study showed some positive results, this meta-analysis had several limitations that should be taken consideration when assessing the results. First, although we performed subgroup analyses stratified by ethnicity, tumor stage, and the Gleason score, heterogeneity of TaqI polymorphism among the studies still exists, which suggested that other potential confounding factors were present in the included studies, such as genotyping error, selection bias, population-specific gene–gene or gene–environment interaction, allelic heterogeneity, and chance.41,42 Although evidence for heterogeneity exists, the sensitivity analysis indicated that studies contributing to the heterogeneity did not significantly affect the estimate of the overall OR. Second, the overall outcomes were based on unadjusted effect estimates. Although the cases and controls were matched for age, sex, and residence in all studies, these confounding factors could slightly modify the effective estimates and a more precise evaluation would have to be adjusted for the potentially suspicious factors. Third, benign prostate hyperplasia was used as control in some included studies, which could affect the pooled results to a varying degree. Finally, in some pooled analyses such as Gleason score striated analysis, the number of included studies was too small, so further relevant studies should be performed in the future so that a stronger conclusion could be drawn.

Conclusion

In summary, a strong association was observed between VDR TaqI genetic polymorphism and PCa, and therefore, TaqI genetic polymorphism may be valuable as a biomarker, especially in Asians. Considering that the quality and quantity of the reviewed articles were limited, larger, well-designed studies should be used in the future to further confirm the association between TaqI genetic polymorphism and PCa. Characteristics and quality assessment of eligible studies in meta-analysis Abbreviations: H-w, Hardy-Weinberg; RFLP, restriction fragment length polymorphism; PCR, polymerase chain reaction; SSCP, single-strand conformation polymorphism. Distribution of TaqI allele and genotype
Table S1

Characteristics and quality assessment of eligible studies in meta-analysis

StudyCountryEthnicityStudy designGenotyping methodQuality indicators from Newcastle–Ottawa ScaleH–w test
Taylor et al6USACaucasian, AfricanHospital basedRFLP-PCR6Yes
Kibel et al19USACaucasian, AfricanHospital basedPCR-RFLP7Yes
Ma et al20USACaucasianNested in PHS cohort studyPCR-RFLP7Yes
Correa-Cerro et al21GermanyCaucasianHospital basedPCR-RFLP6Yes
Watanabe et al22JapanAsianHospital basedPCR-RFLP6No
Furuya et al23JapanAsianHospital basedPCR-RFLP6Yes
Habuchi et al24JapanAsianHospital basedPCR-RFLP6Yes
Blazer et al25USACaucasian, AfricanCommunity basedPCR-RFLP8No
Hamasaki et al3JapanAsianHospital basedPCR-RFLP6Yes
Medeiros et al26PortugalCaucasianHospital basedPCR-RFLP6Yes
Gsur et al27AustriaCaucasianHospital basedPCR-RFLP7Yes
Tayeb et al28UKCaucasianSelected from pathology databasePCR-SSCP6Yes
Tayeb et al29UKCaucasianHospital basedPCR-RFLP6Yes
Maistro et al30BrazilCaucasian, AfricanPopulation basedPCR-RFLP6Yes
Bodiwala et al31UKCaucasianHospital basedPCR-RFLP6Yes
Oakley-Girvan et al32USACaucasian, AfricanPopulation basedPCR-RFLP6Yes
Huang et al33TaiwanAsianHospital basedPCR-RFLP6Yes
John et al34USACaucasianPopulation basedPCR-RFLP6Yes
Andersson et al35SwedenCaucasianHospital basedPCR-RFLP6Yes
Chaimuangraj et al36ThailandAsianHospital basedPCR-RFLP6Yes
Holick et al4USAAfrican, CaucasianPopulation basedPCR-SSCP6Yes
Onen et al37TurkeyCaucasianHospital basedPCR-RFLP6Yes
Onsory et al38IndiaIndianHospital basedPCR-SSCP6Yes
Rowland et al14AmericanAfrican, CaucasianPopulation basedPCR-RFLP6Yes
Hu et al15People’s Republic of ChinaAsianHospital basedReal-time PCR6Yes
Yousaf et al16PakistanAsianHospital basedPCR-SSCP6Yes
Jingwi et al17AmericanCaucasianHospital basedReal-time PCR6Yes

Abbreviations: H-w, Hardy-Weinberg; RFLP, restriction fragment length polymorphism; PCR, polymerase chain reaction; SSCP, single-strand conformation polymorphism.

Table S2

Distribution of TaqI allele and genotype

StudyGroupAllele
Genotype
nTtnTTTttt
Taylor et al6Case2161308610831689
Control340187153170547937
Kibel et al19Case8254284119166
Control8248344115188
Ma et al20Case74445429037213418652
204 control1,17870747158920429986
Correa-Cerro et al21Case21213577106483919
Control1901167495325211
Watanabe et al22Case2001782210080182
Control40435648202160366
Furuya et al23Case132107256641250
Control120100206041181
Habuchi et al24Case44439648222176442
Control67458787337253813
Blazer et al25Case154886677244013
Control366212154183687639
Hamasaki et al3Case2302042611591222
Control2662165013391348
Medeiros et al26Case324195129162529119
Control412238174206739241
Gsur et al27Case380227153190718534
Control380249131190818722
Tayeb et al28Case422418217104
Control75845330537913618162
Tayeb et al29Case56524282521
Control11283295632195
Maistro et al30Case330202128165608223
Control400272128200958223
Bodiwala et al31Case73644429236813317857
Control4862852012438012538
Oakley-Girvan et al32Case69041827234512417051
Control58436521929211513542
Huang et al33Case32030614160146140
Control41038426205179260
John et al34Case84852832042416420060
Control87250636643615320083
Andersson et al35Case274164110137516224
Control352212140176677831
Chaimuangraj et al36Case56506282260
Control148132167459141
Holick et al4Case1,17273044258623825494
Control1,09064844254518827285
Onen et al37Case26618086133625615
Control314189125157577525
Onsory et al38Case2001505010055405
Control2001346610043489
Rowland et al14Case3,2522,1721,0801,626732708186
Control2,1441,3767681,072451474147
Hu et al15Case2162021410896102
Control48446024242219221
Yousaf et al16Case8867214427134
Control23816375119761132
Jingwi et al17Case61245116130617011125
Control50232517725110511531
  42 in total

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2.  Significance of vitamin D receptor gene polymorphism for prostate cancer risk in Japanese.

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7.  Prediction of bone density from vitamin D receptor alleles.

Authors:  N A Morrison; J C Qi; A Tokita; P J Kelly; L Crofts; T V Nguyen; P N Sambrook; J A Eisman
Journal:  Nature       Date:  1994-01-20       Impact factor: 49.962

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9.  Association of prostate cancer with vitamin D receptor gene polymorphism.

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  4 in total

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