Literature DB >> 27033230

From global to local: exploring the relationship between parameters and behaviors in models of electrical excitability.

Patrick Fletcher1, Richard Bertram2, Joel Tabak3.   

Abstract

Models of electrical activity in excitable cells involve nonlinear interactions between many ionic currents. Changing parameters in these models can produce a variety of activity patterns with sometimes unexpected effects. Further more, introducing new currents will have different effects depending on the initial parameter set. In this study we combined global sampling of parameter space and local analysis of representative parameter sets in a pituitary cell model to understand the effects of adding K (+) conductances, which mediate some effects of hormone action on these cells. Global sampling ensured that the effects of introducing K (+) conductances were captured across a wide variety of contexts of model parameters. For each type of K (+) conductance we determined the types of behavioral transition that it evoked. Some transitions were counterintuitive, and may have been missed without the use of global sampling. In general, the wide range of transitions that occurred when the same current was applied to the model cell at different locations in parameter space highlight the challenge of making accurate model predictions in light of cell-to-cell heterogeneity. Finally, we used bifurcation analysis and fast/slow analysis to investigate why specific transitions occur in representative individual models. This approach relies on the use of a graphics processing unit (GPU) to quickly map parameter space to model behavior and identify parameter sets for further analysis. Acceleration with modern low-cost GPUs is particularly well suited to exploring the moderate-sized (5-20) parameter spaces of excitable cell and signaling models.

Keywords:  Bifurcation analysis; Electrical activity; Global parameter sampling; Graphics processing unit; Pituitary lactotroph

Mesh:

Year:  2016        PMID: 27033230     DOI: 10.1007/s10827-016-0600-1

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  33 in total

1.  A database of computational models of a half-center oscillator for analyzing how neuronal parameters influence network activity.

Authors:  Anca Doloc-Mihu; Ronald L Calabrese
Journal:  J Biol Phys       Date:  2011-02-12       Impact factor: 1.365

2.  Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia.

Authors:  Robert J Calin-Jageman; Mark J Tunstall; Brett D Mensh; Paul S Katz; William N Frost
Journal:  J Neurophysiol       Date:  2007-07-25       Impact factor: 2.714

3.  A geometric understanding of how fast activating potassium channels promote bursting in pituitary cells.

Authors:  Theodore Vo; Joël Tabak; Richard Bertram; Martin Wechselberger
Journal:  J Comput Neurosci       Date:  2013-07-03       Impact factor: 1.621

4.  A model of neuronal bursting using three coupled first order differential equations.

Authors:  J L Hindmarsh; R M Rose
Journal:  Proc R Soc Lond B Biol Sci       Date:  1984-03-22

5.  Increase in sodium conductance decreases firing rate and gain in model neurons.

Authors:  Tilman J Kispersky; Jonathan S Caplan; Eve Marder
Journal:  J Neurosci       Date:  2012-08-08       Impact factor: 6.167

6.  How multiple conductances determine electrophysiological properties in a multicompartment model.

Authors:  Adam L Taylor; Jean-Marc Goaillard; Eve Marder
Journal:  J Neurosci       Date:  2009-04-29       Impact factor: 6.167

7.  Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach.

Authors:  Cengiz Günay; Jeremy R Edgerton; Dieter Jaeger
Journal:  J Neurosci       Date:  2008-07-23       Impact factor: 6.167

8.  Parameter-sweeping techniques for temporal dynamics of neuronal systems: case study of Hindmarsh-Rose model.

Authors:  Roberto Barrio; Andrey Shilnikov
Journal:  J Math Neurosci       Date:  2011-07-11       Impact factor: 1.300

9.  Dynamical systems theory in physiology.

Authors:  Arthur Sherman
Journal:  J Gen Physiol       Date:  2011-07       Impact factor: 4.086

10.  It is not the parts, but how they interact that determines the behaviour of circadian rhythms across scales and organisms.

Authors:  Daniel DeWoskin; Weihua Geng; Adam R Stinchcombe; Daniel B Forger
Journal:  Interface Focus       Date:  2014-06-06       Impact factor: 3.906

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  7 in total

Review 1.  Common and diverse elements of ion channels and receptors underlying electrical activity in endocrine pituitary cells.

Authors:  Patrick A Fletcher; Arthur Sherman; Stanko S Stojilkovic
Journal:  Mol Cell Endocrinol       Date:  2017-06-24       Impact factor: 4.102

2.  Modeling the diversity of spontaneous and agonist-induced electrical activity in anterior pituitary corticotrophs.

Authors:  Patrick A Fletcher; Hana Zemkova; Stanko S Stojilkovic; Arthur Sherman
Journal:  J Neurophysiol       Date:  2017-02-22       Impact factor: 2.714

3.  The Effects of GABAergic Polarity Changes on Episodic Neural Network Activity in Developing Neural Systems.

Authors:  Wilfredo Blanco; Richard Bertram; Joël Tabak
Journal:  Front Comput Neurosci       Date:  2017-09-29       Impact factor: 2.380

4.  A computational model for gonadotropin releasing cells in the teleost fish medaka.

Authors:  Geir Halnes; Simen Tennøe; Trude M Haug; Gaute T Einevoll; Finn-Arne Weltzien; Kjetil Hodne
Journal:  PLoS Comput Biol       Date:  2019-08-22       Impact factor: 4.475

5.  Ion channel noise shapes the electrical activity of endocrine cells.

Authors:  David M Richards; Jamie J Walker; Joel Tabak
Journal:  PLoS Comput Biol       Date:  2020-04-06       Impact factor: 4.475

6.  Network Properties of Electrically Coupled Bursting Pituitary Cells.

Authors:  Mehran Fazli; Richard Bertram
Journal:  Front Endocrinol (Lausanne)       Date:  2022-07-06       Impact factor: 6.055

7.  Quantitative roles of ion channel dynamics on ventricular action potential.

Authors:  Ahmet Kürşad Sırcan; Sevgi Şengül Ayan
Journal:  Channels (Austin)       Date:  2021-12       Impact factor: 2.581

  7 in total

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