Literature DB >> 27025478

Mathematics analysis of polymerase chain reaction kinetic curves.

D G Sochivko1, A A Fedorov2, D A Varlamov3, V E Kurochkin4, R V Petrov5.   

Abstract

The paper reviews different approaches to the mathematical analysis of polymerase chain reaction (PCR) kinetic curves. The basic principles of PCR mathematical analysis are presented. Approximation of PCR kinetic curves and PCR efficiency curves by various functions is described. Several PCR models based on chemical kinetics equations are suggested. Decision criteria for an optimal function to describe PCR efficiency are proposed.

Mesh：

Year:  2016        PMID： 27025478     DOI： 10.1134/S160767291601004X

Source DB:  PubMed          Journal:  Dokl Biochem Biophys        ISSN： 1607-6729            Impact factor:   0.788


  13 in total

1.  Stochastic modeling of polymerase chain reaction kinetic curves.

Authors:  D G Sochivko; A A Fedorov; V V Lavrov; D A Varlamov; V E Kurochkin; R V Petrov
Journal:  Dokl Biochem Biophys       Date:  2011-09-18       Impact factor: 0.788

2.  Enzymological considerations for a theoretical description of the quantitative competitive polymerase chain reaction (QC-PCR).

Authors:  S Schnell; C Mendoza
Journal:  J Theor Biol       Date:  1997-02-21       Impact factor: 2.691

3.  Kinetics of renaturation of DNA.

Authors:  J G Wetmur; N Davidson
Journal:  J Mol Biol       Date:  1968-02-14       Impact factor: 5.469

4.  Kinetic PCR analysis: real-time monitoring of DNA amplification reactions.

Authors:  R Higuchi; C Fockler; G Dollinger; R Watson
Journal:  Biotechnology (N Y)       Date:  1993-09

5.  A mechanistic model of PCR for accurate quantification of quantitative PCR data.

Authors:  Gregory J Boggy; Peter J Woolf
Journal:  PLoS One       Date:  2010-08-30       Impact factor: 3.240

6.  Enhanced analysis of real-time PCR data by using a variable efficiency model: FPK-PCR.

Authors:  Antoon Lievens; S Van Aelst; M Van den Bulcke; E Goetghebeur
Journal:  Nucleic Acids Res       Date:  2011-11-18       Impact factor: 16.971

7.  Polymerase/DNA interactions and enzymatic activity: multi-parameter analysis with electro-switchable biosurfaces.

Authors:  Andreas Langer; Michael Schräml; Ralf Strasser; Herwin Daub; Thomas Myers; Dieter Heindl; Ulrich Rant
Journal:  Sci Rep       Date:  2015-07-15       Impact factor: 4.379

8.  Simultaneous fitting of real-time PCR data with efficiency of amplification modeled as Gaussian function of target fluorescence.

Authors:  Anke Batsch; Andrea Noetel; Christian Fork; Anita Urban; Daliborka Lazic; Tina Lucas; Julia Pietsch; Andreas Lazar; Edgar Schömig; Dirk Gründemann
Journal:  BMC Bioinformatics       Date:  2008-02-12       Impact factor: 3.169

9.  A new real-time PCR method to overcome significant quantitative inaccuracy due to slight amplification inhibition.

Authors:  Michele Guescini; Davide Sisti; Marco B L Rocchi; Laura Stocchi; Vilberto Stocchi
Journal:  BMC Bioinformatics       Date:  2008-07-30       Impact factor: 3.169

10.  Highly accurate sigmoidal fitting of real-time PCR data by introducing a parameter for asymmetry.

Authors:  Andrej-Nikolai Spiess; Caroline Feig; Christian Ritz
Journal:  BMC Bioinformatics       Date:  2008-04-29       Impact factor: 3.169
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  2 in total

1.  Mathematical model of polymerase chain reaction with temperature-dependent parameters.

Authors:  D G Sochivko; A A Fedorov; Y I Alekseev; V E Kurochkin; M V Dubina
Journal:  Dokl Biochem Biophys       Date:  2017-04-19       Impact factor: 0.788

2.  A novel data processing method CyC* for quantitative real time polymerase chain reaction minimizes cumulative error.

Authors:  Linzhong Zhang; Rui Dong; Shu Wei; Han-Chen Zhou; Meng-Xian Zhang; Karthikeyan Alagarsamy
Journal:  PLoS One       Date:  2019-06-11       Impact factor: 3.240
  2 in total

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