Literature DB >> 27023773

Tet proteins enhance the developmental hourglass.

Peter G Hendrickson1, Bradley R Cairns1.   

Abstract

A new study compares DNA methylation profiles in developing zebrafish, Xenopus tropicalis and mice and suggests roles for Tet proteins in demethylating conserved gene enhancers during the phylotypic period of early development. These findings provide an epigenetic underpinning for the 'hourglass' model.

Entities:  

Mesh：

Year:  2016        PMID： 27023773     DOI： 10.1038/ng.3533

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  9 in total

1.  A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns.

Authors:  Tomislav Domazet-Lošo; Diethard Tautz
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962

2.  Gene expression divergence recapitulates the developmental hourglass model.

Authors:  Alex T Kalinka; Karolina M Varga; Dave T Gerrard; Stephan Preibisch; David L Corcoran; Julia Jarrells; Uwe Ohler; Casey M Bergman; Pavel Tomancak
Journal:  Nature       Date:  2010-12-09       Impact factor: 49.962

3.  Evolution of transcriptional enhancers and animal diversity.

Authors:  Marcelo Rubinstein; Flávio S J de Souza
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

Review 4.  The developmental hourglass model: a predictor of the basic body plan?

Authors:  Naoki Irie; Shigeru Kuratani
Journal:  Development       Date:  2014-12       Impact factor: 6.868

5.  Active DNA demethylation at enhancers during the vertebrate phylotypic period.

Authors:  Ozren Bogdanović; Arne H Smits; Elisa de la Calle Mustienes; Juan J Tena; Ethan Ford; Ruth Williams; Upeka Senanayake; Matthew D Schultz; Saartje Hontelez; Ila van Kruijsbergen; Teresa Rayon; Felix Gnerlich; Thomas Carell; Gert Jan C Veenstra; Miguel Manzanares; Tatjana Sauka-Spengler; Joseph R Ecker; Michiel Vermeulen; José Luis Gómez-Skarmeta; Ryan Lister
Journal:  Nat Genet       Date:  2016-02-29       Impact factor: 38.330

6.  Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.

Authors:  Naoki Irie; Shigeru Kuratani
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

7.  Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.

Authors:  Hyung Joo Lee; Rebecca F Lowdon; Brett Maricque; Bo Zhang; Michael Stevens; Daofeng Li; Stephen L Johnson; Ting Wang
Journal:  Nat Commun       Date:  2015-02-20       Impact factor: 14.919

8.  De novo DNA methylation drives 5hmC accumulation in mouse zygotes.

Authors:  Buhe Nashun; Kenjiro Shirane; Shoma Nakagawa; Rachel Amouroux; Peter Ws Hill; Zelpha D'Souza; Manabu Nakayama; Masashi Matsuda; Aleksandra Turp; Elodie Ndjetehe; Vesela Encheva; Nobuaki R Kudo; Haruhiko Koseki; Hiroyuki Sasaki; Petra Hajkova
Journal:  Nat Cell Biol       Date:  2016-01-11       Impact factor: 28.824

9.  Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern.

Authors:  Magdalena E Potok; David A Nix; Timothy J Parnell; Bradley R Cairns
Journal:  Cell       Date:  2013-05-09       Impact factor: 41.582
  9 in total
  1 in total

1.  Heart enhancers with deeply conserved regulatory activity are established early in zebrafish development.

Authors:  Xuefei Yuan; Mengyi Song; Patrick Devine; Benoit G Bruneau; Ian C Scott; Michael D Wilson
Journal:  Nat Commun       Date:  2018-11-26       Impact factor: 14.919
  1 in total

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