| Literature DB >> 27023591 |
Jun-Wei Gao1, Ling Zeng2, An-Qiang Zhang3, Xiao Wang4, Wei Pan5, Ding-Yuan Du6, Lian-Yang Zhang7, Wei Gu8, Jian-Xin Jiang9.
Abstract
BACKGROUND: Peroxisome proliferator-activated receptors (PPARs) play important roles in the development of inflammatory diseases and sepsis. Recently, genetic variants of PPARs genes have been widely studied in some inflammatory diseases. However, the association between PPAR family of genes polymorphisms and sepsis risk in trauma patients was little known.Entities:
Keywords: MODS; genetic polymorphism; peroxisome proliferator-activated receptor; sepsis; trauma
Mesh:
Substances:
Year: 2016 PMID: 27023591 PMCID: PMC4847036 DOI: 10.3390/ijerph13040374
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
SNPs identified within the PPAR family genes.
| Gene | rs Number | Location | Variation | MAF 1 (%) | Region |
|---|---|---|---|---|---|
| rs135551 | 6523 | G/A | 8.4 | Intron 2 | |
| rs5769178 | 14776 | A/C | 15.7 | Intron 2 | |
| rs4253711 | 48535 | G/A | 15.6 | Intron 3 | |
| rs4823613 | 51809 | A/G | 21.7 | Intron 3 | |
| rs6902123 | 20087 | T/C | 5.6 | Intron 2 | |
| rs2016520 | 68444 | T/C | 26.3 | 5′-UTR | |
| rs4684846 | 9501 | G/A | 46.0 | Intron 1 | |
| rs10865710 | 23850 | C/G | 34.9 | Extron A2 | |
| rs1822825 | 120615 | G/A | 45.3 | Intron 5 |
1 Minor allele frequency.
Distribution of the nine genotyped SNPs in trauma patients.
| SNPs | Number | MAF 1 (%) | Genotypes, Number (%) | HWE 3 Test | |||
|---|---|---|---|---|---|---|---|
| Patients | Database 2 | Wild-Type | Heterozygous | Variant | |||
| rs135551 | 734 | 7.6 | 8.4 | 628 (85.6) | 101 (13.8) | 5 (0.6) | 0.67 |
| rs5769178 | 734 | 15.0 | 15.7 | 525 (71.5) | 198 (27.0) | 11 (1.5) | 0.11 |
| rs4253711 | 734 | 14.4 | 15.6 | 543 (74.0) | 170 (23.2) | 21 (2.8) | 0.09 |
| rs4823613 | 734 | 23.2 | 21.7 | 436 (59.4) | 256 (34.9) | 42 (5.7) | 0.59 |
| rs6902123 | 734 | 3.1 | 5.6 | 690 (94.0) | 42 (5.7) | 2 (0.3) | 0.12 |
| rs2016520 | 734 | 30.4 | 26.3 | 357 (48.6) | 308 (42.0) | 69 (9.4) | 0.83 |
| rs4684846 | 727 | 45.8 | 46.0 | 208 (28.6) | 372 (51.2) | 147 (20.2) | 0.41 |
| rs10865710 | 734 | 34.6 | 34.9 | 316 (43.1) | 328 (44.7) | 90 (12.2) | 0.73 |
| rs1822825 | 732 | 45.5 | 45.3 | 215 (29.4) | 368 (50.3) | 149 (20.3) | 0.71 |
1 Minor allele frequency; 2 data are derived from the HapMap database for Chinese Han in Beijing (n = 137); 3 Hardy–Weinberg equilibrium.
Overall clinical characteristics of trauma patients.
| Clinical Characteristics | Patient Data ( |
|---|---|
| Mean age ± SD, years | 41.3 ± 12.1 |
| Age range, years | 18–65 |
| Males/females, n | 591/143 |
| Mean ISS 1 ± SD | 22.3 ± 9.4 |
| ≥16 to <25, n | 435 |
| ≥25, n | 299 |
| Injured body regions, n | |
| Head | 391 |
| Thorax | 473 |
| Abdomen | 280 |
| Extremities | 436 |
| Number of regions injured, n | |
| Two | 272 |
| Three | 188 |
| All four | 66 |
| Organ dysfunction, n (%) | 374 (51.0%) |
| One, n | 258 |
| Two, n | 95 |
| Three or above, n | 21 |
| Sepsis, n (%) | 300 (40.9%) |
| Source of infection (%) | |
| Respiratory tract infection | 46.4 |
| Primary bloodstream infection | 19.6 |
| Urinary tract infection | 14.9 |
| Catheter-associated infection | 9.5 |
| Wound infection | 7.2 |
| Others 2 | 2.4 |
| Pathogens (positive blood cultures), % | |
| Gram-negative | 21.7 |
| Gram-positive | 11.3 |
| Fungi | 3.3 |
| Mixed Gram-negative and Gram-positive | 9.7 |
| Negative blood cultures | 54.0 |
1 Injury Severity Score; 2 other sites of infection included soft-tissue infection, bone infection and ear infection.
Clinical relevance of the selected SNPs among trauma patients in Chongqing District.
| SNPs | Genotype | Number | Age, Years | Sex, Male/Female, n | ISS 1 | Sepsis, n | MOD 2 Score |
|---|---|---|---|---|---|---|---|
| rs135551 | AA | 5 | 40.8 ± 16.6 | 3/2 | 15.6 ± 3.8 | 2 | 4.0 ± 2.2 |
| AG | 101 | 40.0 ± 11.7 | 87/14 | 21.3 ± 8.1 | 36 | 4.5 ± 2.2 | |
| GG | 628 | 41.4 ± 12.1 | 501/127 | 22.5 ± 9.6 | 262 | 4.9 ± 2.6 | |
| rs5769178 | AA | 525 | 40.9 ± 12.6 | 429/96 | 21.8 ± 9.3 | 209 | 4.8 ± 2.5 |
| AC | 198 | 42.5 ± 10.6 | 156/42 | 23.3 ± 9.1 | 86 | 4.9 ± 2.6 | |
| CC | 11 | 34.9 ± 7.6 | 6/5 | 28.9 ± 15.8 | 5 | 5.4 ± 2.7 | |
| rs4253711 | AA | 21 | 40.1 ± 14.2 | 16/5 | 23.3 ± 12.9 | 7 | 4.5 ± 2.1 |
| AG | 170 | 40.4 ± 11.5 | 132/38 | 22.3 ± 8.8 | 62 | 4.7 ± 2.5 | |
| GG | 543 | 41.6 ± 12.2 | 443/100 | 22.3 ± 9.5 | 231 | 4.9 ± 2.5 | |
| rs4823613 | AA | 436 | 41.5 ± 12.1 | 351/85 | 22.2 ± 9.6 | 186 | 5.0 ± 2.5 |
| AG | 256 | 41.2 ± 12.0 | 207/49 | 22.4 ± 9.1 | 100 | 4.9 ± 2.5 | |
| GG | 42 | 39.1 ± 12.9 | 33/9 | 22.8 ± 9.5 | 14 | 5.1 ± 2.6 | |
| rs6902123 | CC | 2 | 41.2 ± 5.7 | 2/0 | 25.0 ± 4.2 | 1 | 5.5 ± 2.1 |
| CT | 42 | 40.5 ± 12.0 | 31/11 | 21.1 ± 8.4 | 16 | 3.9 ± 1.8 | |
| TT | 690 | 41.3 ± 12.1 | 558/132 | 22.4 ± 9.5 | 283 | 4.9 ± 2.5 | |
| rs2016520 | CC | 69 | 41.7 ± 10.9 | 53/13 | 22.5 ± 8.9 | 25 | 4.6 ± 2.5 |
| CT | 308 | 41.1 ± 12.0 | 243/65 | 22.3 ± 9.9 | 131 | 4.8 ± 2.4 | |
| TT | 357 | 41.3 ± 12.4 | 292/65 | 22.2 ± 9.1 | 144 | 5.0 ± 2.6 | |
| rs4684846 | AA | 147 | 41.0 ± 11.6 | 117/30 | 23.1 ± 9.1 | 63 | 5.3 ± 2.7 |
| AG | 372 | 41.1 ± 12.4 | 302/70 | 22.0 ± 9.4 | 146 | 4.7 ± 2.3 | |
| GG | 208 | 41.8 ± 11.9 | 166/42 | 22.2 ± 9.8 | 89 | 5.0 ± 2.7 | |
| rs10865710 | CC | 316 | 41.0 ± 11.9 | 257/59 | 22.3 ± 10.0 | 116 | 4.9 ± 2.5 |
| CG | 328 | 41.3 ± 12.3 | 263/65 | 22.3 ± 9.0 | 134 | 4.6 ± 2.3 | |
| GG | 90 | 41.9 ± 12.0 | 71/19 | 22.4 ± 9.0 | 50 | 5.8 ± 3.0 | |
| a1, b1 | a2 | ||||||
| rs1822825 | AA | 149 | 41.9 ± 11.9 | 117/32 | 21.1 ± 9.3 | 60 | 4.9 ± 2.4 |
| AG | 368 | 40.9 ± 12.2 | 299/69 | 22.6 ± 9.1 | 156 | 4.8 ± 2.6 | |
| GG | 215 | 41.4 ± 12.1 | 174/41 | 22.6 ± 10.1 | 83 | 4.9 ± 2.4 |
1 Injury Severity Score; 2 multiple organ dysfunction; a1, p = 0.002; a2, p = 0.041 for the recessive model; b1, p = 0.046 for the dominant model.
Figure 1Effect of the PPARγ rs10865710 polymorphism on LPS-induced TNFα production (p = 0.041 for the dominant model; p = 0.027 for the recessive model).