Literature DB >> 27016469

Advancements in zebrafish applications for 21st century toxicology.

Gloria R Garcia1, Pamela D Noyes1, Robert L Tanguay2.   

Abstract

The zebrafish model is the only available high-throughput vertebrate assessment system, and it is uniquely suited for studies of in vivo cell biology. A sequenced and annotated genome has revealed a large degree of evolutionary conservation in comparison to the human genome. Due to our shared evolutionary history, the anatomical and physiological features of fish are highly homologous to humans, which facilitates studies relevant to human health. In addition, zebrafish provide a very unique vertebrate data stream that allows researchers to anchor hypotheses at the biochemical, genetic, and cellular levels to observations at the structural, functional, and behavioral level in a high-throughput format. In this review, we will draw heavily from toxicological studies to highlight advances in zebrafish high-throughput systems. Breakthroughs in transgenic/reporter lines and methods for genetic manipulation, such as the CRISPR-Cas9 system, will be comprised of reports across diverse disciplines.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; High-throughput; Toxicology; Transgenic/Reporter; Zebrafish

Mesh:

Year:  2016        PMID: 27016469      PMCID: PMC4851906          DOI: 10.1016/j.pharmthera.2016.03.009

Source DB:  PubMed          Journal:  Pharmacol Ther        ISSN: 0163-7258            Impact factor:   12.310


  147 in total

1.  High-throughput assay for small molecules that modulate zebrafish embryonic heart rate.

Authors:  C Geoffrey Burns; David J Milan; Eric J Grande; Wolfgang Rottbauer; Calum A MacRae; Mark C Fishman
Journal:  Nat Chem Biol       Date:  2005-09-18       Impact factor: 15.040

Review 2.  Controlling morpholino experiments: don't stop making antisense.

Authors:  Judith S Eisen; James C Smith
Journal:  Development       Date:  2008-04-09       Impact factor: 6.868

Review 3.  Modeling cardiovascular disease in the zebrafish.

Authors:  Timothy J A Chico; Philip W Ingham; David C Crossman
Journal:  Trends Cardiovasc Med       Date:  2008-05       Impact factor: 6.677

4.  Establishment of a novel experimental protocol for drug-induced seizure liability screening based on a locomotor activity assay in zebrafish.

Authors:  Naoteru Koseki; Jiro Deguchi; Akihito Yamashita; Izuru Miyawaki; Hitoshi Funabashi
Journal:  J Toxicol Sci       Date:  2014-08       Impact factor: 2.196

5.  Transparent adult zebrafish as a tool for in vivo transplantation analysis.

Authors:  Richard Mark White; Anna Sessa; Christopher Burke; Teresa Bowman; Jocelyn LeBlanc; Craig Ceol; Caitlin Bourque; Michael Dovey; Wolfram Goessling; Caroline Erter Burns; Leonard I Zon
Journal:  Cell Stem Cell       Date:  2008-02-07       Impact factor: 24.633

6.  Modulatory neurotransmitter systems and behavior: towards zebrafish models of neurodegenerative diseases.

Authors:  Pertti Panula; Ville Sallinen; Maria Sundvik; Juha Kolehmainen; Veera Torkko; Anu Tiittula; Maxim Moshnyakov; Piotr Podlasz
Journal:  Zebrafish       Date:  2006       Impact factor: 1.985

7.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

8.  Precise in-frame integration of exogenous DNA mediated by CRISPR/Cas9 system in zebrafish.

Authors:  Yu Hisano; Tetsushi Sakuma; Shota Nakade; Rie Ohga; Satoshi Ota; Hitoshi Okamoto; Takashi Yamamoto; Atsuo Kawahara
Journal:  Sci Rep       Date:  2015-03-05       Impact factor: 4.379

9.  Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.

Authors:  Scott C Baraban; Matthew T Dinday; Gabriela A Hortopan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  From omics to drug metabolism and high content screen of natural product in zebrafish: a new model for discovery of neuroactive compound.

Authors:  Ming Wai Hung; Zai Jun Zhang; Shang Li; Benson Lei; Shuai Yuan; Guo Zhen Cui; Pui Man Hoi; Kelvin Chan; Simon Ming Yuen Lee
Journal:  Evid Based Complement Alternat Med       Date:  2012-08-05       Impact factor: 2.629

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  56 in total

Review 1.  The scales of the zebrafish: host-microbiota interactions from proteins to populations.

Authors:  Adam R Burns; Karen Guillemin
Journal:  Curr Opin Microbiol       Date:  2017-06-12       Impact factor: 7.934

Review 2.  Opportunities and challenges for using the zebrafish to study neuronal connectivity as an endpoint of developmental neurotoxicity.

Authors:  Galen W Miller; Vidya Chandrasekaran; Bianca Yaghoobi; Pamela J Lein
Journal:  Neurotoxicology       Date:  2018-04-25       Impact factor: 4.294

Review 3.  Inherited mitochondrial genomic instability and chemical exposures.

Authors:  Sherine S L Chan
Journal:  Toxicology       Date:  2017-07-26       Impact factor: 4.221

4.  Epigenetic effects of environmental chemicals: insights from zebrafish.

Authors:  Neelakanteswar Aluru
Journal:  Curr Opin Toxicol       Date:  2017-07-14

Review 5.  Alternative Animal and Non-Animal Models for Drug Discovery and Development: Bonus or Burden?

Authors:  Irlan Almeida Freires; Janaina de Cássia Orlandi Sardi; Ricardo Dias de Castro; Pedro Luiz Rosalen
Journal:  Pharm Res       Date:  2016-11-17       Impact factor: 4.200

6.  Editorial: Special Issue "Effect-related evaluation of anthropogenic trace substances-concepts for genotoxicity, neurotoxicity and endocrine effects".

Authors:  Tamara Grummt; Thomas-Benjamin Seiler; Thomas Braunbeck; Henner Hollert
Journal:  Environ Sci Pollut Res Int       Date:  2018-01-11       Impact factor: 4.223

7.  A data-driven weighting scheme for multivariate phenotypic endpoints recapitulates zebrafish developmental cascades.

Authors:  Guozhu Zhang; Kyle R Roell; Lisa Truong; Robert L Tanguay; David M Reif
Journal:  Toxicol Appl Pharmacol       Date:  2016-11-22       Impact factor: 4.219

8.  A Reduced Transcriptome Approach to Assess Environmental Toxicants Using Zebrafish Embryo Test.

Authors:  Pingping Wang; Pu Xia; Jianghua Yang; Zhihao Wang; Ying Peng; Wei Shi; Daniel L Villeneuve; Hongxia Yu; Xiaowei Zhang
Journal:  Environ Sci Technol       Date:  2018-01-02       Impact factor: 9.028

9.  Zebrafish have an ethanol-inducible hepatic 4-nitrophenol hydroxylase that is not CYP2E1-like.

Authors:  Jessica H Hartman; Jordan S Kozal; Richard T Di Giulio; Joel N Meyer
Journal:  Environ Toxicol Pharmacol       Date:  2017-07-10       Impact factor: 4.860

10.  Development of a high-throughput in vivo screening platform for particulate matter exposures.

Authors:  Courtney Roper; Staci L Massey Simonich; Robert L Tanguay
Journal:  Environ Pollut       Date:  2018-02-21       Impact factor: 8.071

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