Literature DB >> 27016433

Prediction of retention time in reversed-phase liquid chromatography as a tool for steroid identification.

Giuseppe Marco Randazzo1, David Tonoli2, Stephanie Hambye1, Davy Guillarme1, Fabienne Jeanneret2, Alessandra Nurisso1, Laura Goracci3, Julien Boccard1, Serge Rudaz4.   

Abstract

The untargeted profiling of steroids constitutes a growing research field because of their importance as biomarkers of endocrine disruption. New technologies in analytical chemistry, such as ultra high-pressure liquid chromatography coupled with mass spectrometry (MS), offer the possibility of a fast and sensitive analysis. Nevertheless, difficulties regarding steroid identification are encountered when considering isotopomeric steroids. Thus, the use of retention times is of great help for the unambiguous identification of steroids. In this context, starting from the linear solvent strength (LSS) theory, quantitative structure retention relationship (QSRR) models, based on a dataset composed of 91 endogenous steroids and VolSurf + descriptors combined with a new dedicated molecular fingerprint, were developed to predict retention times of steroid structures in any gradient mode conditions. Satisfactory performance was obtained during nested cross-validation with a predictive ability (Q(2)) of 0.92. The generalisation ability of the model was further confirmed by an average error of 4.4% in external prediction. This allowed the list of candidates associated with identical monoisotopic masses to be strongly reduced, facilitating definitive steroid identification.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Isotopomers identification; LSS theory; Quantitative structure–retention relationships; Retention time prediction; Reversed-phase liquid chromatography; Steroids

Mesh:

Substances:

Year:  2016        PMID: 27016433     DOI: 10.1016/j.aca.2016.02.014

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  8 in total

1.  Prediction of Chromatography Conditions for Purification in Organic Synthesis Using Deep Learning.

Authors:  Mantas Vaškevičius; Jurgita Kapočiūtė-Dzikienė; Liudas Šlepikas
Journal:  Molecules       Date:  2021-04-23       Impact factor: 4.411

2.  Modelling of Hydrophilic Interaction Liquid Chromatography Stationary Phases Using Chemometric Approaches.

Authors:  Meritxell Navarro-Reig; Elena Ortiz-Villanueva; Romà Tauler; Joaquim Jaumot
Journal:  Metabolites       Date:  2017-10-24

3.  QSRR Modeling for Metabolite Standards Analyzed by Two Different Chromatographic Columns Using Multiple Linear Regression.

Authors:  Chrysostomi Zisi; Ioannis Sampsonidis; Stella Fasoula; Konstantinos Papachristos; Michael Witting; Helen G Gika; Panagiotis Nikitas; Adriani Pappa-Louisi
Journal:  Metabolites       Date:  2017-02-09

Review 4.  Towards Mass Spectrometry-Based Chemical Exposome: Current Approaches, Challenges, and Future Directions.

Authors:  Jingchuan Xue; Yunjia Lai; Chih-Wei Liu; Hongyu Ru
Journal:  Toxics       Date:  2019-08-18

Review 5.  Natural products in drug discovery: advances and opportunities.

Authors:  Atanas G Atanasov; Sergey B Zotchev; Verena M Dirsch; Claudiu T Supuran
Journal:  Nat Rev Drug Discov       Date:  2021-01-28       Impact factor: 112.288

Review 6.  Strategies for structure elucidation of small molecules based on LC-MS/MS data from complex biological samples.

Authors:  Zhitao Tian; Fangzhou Liu; Dongqin Li; Alisdair R Fernie; Wei Chen
Journal:  Comput Struct Biotechnol J       Date:  2022-09-07       Impact factor: 6.155

7.  DynaStI: A Dynamic Retention Time Database for Steroidomics.

Authors:  Santiago Codesido; Giuseppe Marco Randazzo; Fabio Lehmann; Víctor González-Ruiz; Arnaud García; Ioannis Xenarios; Robin Liechti; Alan Bridge; Julien Boccard; Serge Rudaz
Journal:  Metabolites       Date:  2019-04-30

8.  Predicting reversed-phase liquid chromatographic retention times of pesticides by deep neural networks.

Authors:  Julien Parinet
Journal:  Heliyon       Date:  2021-12-07
  8 in total

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