| Literature DB >> 27015085 |
Yana Sandlers1, Kelly Mercier2, Wimal Pathmasiri2, Jim Carlson2, Susan McRitchie2, Susan Sumner2, Hilary J Vernon3,4.
Abstract
Barth Syndrome is the only known Mendelian disorder of cardiolipin remodeling, with characteristic clinical features of cardiomyopathy, skeletal myopathy, and neutropenia. While the primary biochemical defects of reduced mature cardiolipin and increased monolysocardiolipin are well-described, much of the downstream biochemical dysregulation has not been uncovered, and biomarkers are limited. In order to further expand upon the knowledge of the biochemical abnormalities in Barth Syndrome, we analyzed metabolite profiles in plasma from a cohort of individuals with Barth Syndrome compared to age-matched controls via 1H nuclear magnetic resonance spectroscopy and liquid chromatography-mass spectrometry. A clear distinction between metabolite profiles of individuals with Barth Syndrome and controls was observed, and was defined by an array of metabolite classes including amino acids and lipids. Pathway analysis of these discriminating metabolites revealed involvement of mitochondrial and extra-mitochondrial biochemical pathways including: insulin regulation of fatty acid metabolism, lipid metabolism, biogenic amine metabolism, amino acid metabolism, endothelial nitric oxide synthase signaling, and tRNA biosynthesis. Taken together, this data indicates broad metabolic dysregulation in Barth Syndrome with wide cellular effects.Entities:
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Year: 2016 PMID: 27015085 PMCID: PMC4807847 DOI: 10.1371/journal.pone.0151802
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Multivariate scores plots for the binned 1H NMR data (BTHS are filled circles, Controls are empty squares, and total pools are empty triangles).
(A) PCA plot for the 33 study samples and the three pooled samples created as quality control samples. The total pools are tightly clustered and centered indicating high quality sample preparation and data acquisition. (B) PCA plot of the 33 study samples. (C) BTHS and controls differentiated with 100% accuracy in the supervised (OPLS-DA) model (Fisher’s probability 1.1 x 10−8, n = 33, 1 predictive component and 4 orthogonal components, R2X (cum) = 0.87, R2Y (cum) = 0.77, Q2 (cum) = 0.16).
Top ten statistically significant pathway maps created using GeneGo enrichment analysis based on library-matched metabolites that differentiate (VIP ≥ 1) patients with BTHS from controls.
(FDR = false discovery rate).
| Rank | Maps | p-value | FDR |
|---|---|---|---|
| 1 | Nicotine signaling in cholinergic neurons | 8.018E-06 | 4.891E-04 |
| 2 | Regulation of lipid metabolism/Insulin regulation of fatty acid metabolism | 4.573E-05 | 1.395E-03 |
| 3 | Role of prenatal nicotine exposure in inhibition of pancreatic beta cells differentiation and function | 1.347E-04 | 2.146E-03 |
| 4 | Amitraz-induced inhibition of Insulin secretion | 1.481E-04 | 2.146E-03 |
| 5 | N-Acylethanolamines, HRASLS-transacylation pathway | 2.245E-04 | 2.146E-03 |
| 6 | Possible influence of low doses of Arsenite on glucose uptake in muscle | 2.417E-04 | 2.146E-03 |
| 7 | Influence of low doses of Arsenite on glucose uptake in adipocytes | 2.969E-04 | 2.146E-03 |
| 8 | Acetylcholine biosynthesis and metabolism | 3.166E-04 | 2.146E-03 |
| 9 | Phospholipid metabolism p.3 | 3.166E-04 | 2.146E-03 |
| 10 | Immune response_IL-7 signaling in T lymphocytes | 4.476E-04 | 2.730E-03 |
Top ten statistically significant pathway maps created using GeneGo enrichment analysis from the NMR and MS p180 Biocrates analyses that are important to differentiating patients with BTHS from controls (VIP ≥ 1).
(FDR = false discovery rate).
| Rank | Maps | p-value | FDR |
|---|---|---|---|
| 1 | Aminoacyl-tRNA biosynthesis in mitochondrion | 9.22E-08 | 1.22E-05 |
| 2 | Aminoacyl-tRNA biosynthesis in cytoplasm | 2.72E-07 | 1.27E-05 |
| 3 | Aminoacyl-tRNA biosynthesis in cytoplasm/ Rodent version | 2.89E-07 | 1.27E-05 |
| 4 | Nociception/Pro-nociceptive action of Nociceptin in spinal cord at low doses | 5.83E-06 | 1.92E-04 |
| 5 | Muscle contraction/Regulation of eNOS activity in endothelial cells | 3.37E-05 | 8.90E-04 |
| 6 | Regulation of lipid metabolism/PPAR regulation of lipid metabolism | 2.32E-04 | 5.10E-03 |
| 7 | Transport_Intracellular cholesterol transport | 1.71E-03 | 3.15E-02 |
| 8 | Apoptosis and survival_NO signaling in apoptosis | 1.98E-03 | 3.15E-02 |
| 9 | Apoptosis and survival_NO signaling in survival | 2.15E-03 | 3.15E-02 |
| 10 | Glycine links | 2.90E-03 | 3.45E-02 |
Fig 2Metabolic pathway analysis of combined NMR and LC-MS data.