Literature DB >> 27012546

CRISPR/Cas9: an advanced tool for editing plant genomes.

Milan Kumar Samanta1, Avishek Dey1, Srimonta Gayen2.   

Abstract

To meet current challenges in agriculture, genome editing using sequence-specific nucleases (SSNs) is a powerful tool for basic and applied plant biology research. Here, we describe the principle and application of available genome editing tools, including zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and the clustered regularly interspaced short palindromic repeat associated CRISPR/Cas9 system. Among these SSNs, CRISPR/Cas9 is the most recently characterized and rapidly developing genome editing technology, and has been successfully utilized in a wide variety of organisms. This review specifically illustrates the power of CRISPR/Cas9 as a tool for plant genome engineering, and describes the strengths and weaknesses of the CRISPR/Cas9 technology compared to two well-established genome editing tools, ZFNs and TALENs.

Keywords:  CRISPR/Cas9; Genome editing; Plants; Sequence-specific nucleases; TALENs; ZFNs

Mesh:

Substances:

Year:  2016        PMID: 27012546     DOI: 10.1007/s11248-016-9953-5

Source DB:  PubMed          Journal:  Transgenic Res        ISSN: 0962-8819            Impact factor:   2.788


  78 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

2.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

3.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

4.  Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells.

Authors:  Xuebing Wu; David A Scott; Andrea J Kriz; Anthony C Chiu; Patrick D Hsu; Daniel B Dadon; Albert W Cheng; Alexandro E Trevino; Silvana Konermann; Sidi Chen; Rudolf Jaenisch; Feng Zhang; Phillip A Sharp
Journal:  Nat Biotechnol       Date:  2014-04-20       Impact factor: 54.908

5.  Efficient targeted mutagenesis in potato by the CRISPR/Cas9 system.

Authors:  Shaohui Wang; Shuaibin Zhang; Wanxing Wang; Xingyao Xiong; Fanrong Meng; Xia Cui
Journal:  Plant Cell Rep       Date:  2015-06-17       Impact factor: 4.570

6.  Policy: Sustainable development goals for people and planet.

Authors:  David Griggs; Mark Stafford-Smith; Owen Gaffney; Johan Rockström; Marcus C Ohman; Priya Shyamsundar; Will Steffen; Gisbert Glaser; Norichika Kanie; Ian Noble
Journal:  Nature       Date:  2013-03-21       Impact factor: 49.962

7.  Efficient gene editing in tomato in the first generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system.

Authors:  Christopher Brooks; Vladimir Nekrasov; Zachary B Lippman; Joyce Van Eck
Journal:  Plant Physiol       Date:  2014-09-15       Impact factor: 8.340

8.  Both CRISPR/Cas-based nucleases and nickases can be used efficiently for genome engineering in Arabidopsis thaliana.

Authors:  Friedrich Fauser; Simon Schiml; Holger Puchta
Journal:  Plant J       Date:  2014-06-17       Impact factor: 6.417

9.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

10.  A guide RNA sequence design platform for the CRISPR/Cas9 system for model organism genomes.

Authors:  Ming Ma; Adam Y Ye; Weiguo Zheng; Lei Kong
Journal:  Biomed Res Int       Date:  2013-10-03       Impact factor: 3.411

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  16 in total

1.  A research program for the socioeconomic impacts of gene editing regulation.

Authors:  Agustina I Whelan; Martin A Lema
Journal:  GM Crops Food       Date:  2017-01-12       Impact factor: 3.074

2.  Cancer gene therapy by NF-κB-activated cancer cell-specific expression of CRISPR/Cas9 targeting telomeres.

Authors:  Wei Dai; Jian Wu; Danyang Wang; Jinke Wang
Journal:  Gene Ther       Date:  2020-02-07       Impact factor: 5.250

3.  Arabidopsis glutamate:glyoxylate aminotransferase 1 (Ler) mutants generated by CRISPR/Cas9 and their characteristics.

Authors:  Yaping Liang; Xiuying Zeng; Xinxiang Peng; Xuewen Hou
Journal:  Transgenic Res       Date:  2018-02-01       Impact factor: 2.788

4.  Engineering canker-resistant plants through CRISPR/Cas9-targeted editing of the susceptibility gene CsLOB1 promoter in citrus.

Authors:  Aihong Peng; Shanchun Chen; Tiangang Lei; Lanzhen Xu; Yongrui He; Liu Wu; Lixiao Yao; Xiuping Zou
Journal:  Plant Biotechnol J       Date:  2017-05-03       Impact factor: 9.803

5.  CRISPR/Cas9-mediated genome editing efficiently creates specific mutations at multiple loci using one sgRNA in Brassica napus.

Authors:  Hong Yang; Jia-Jing Wu; Ting Tang; Ke-De Liu; Cheng Dai
Journal:  Sci Rep       Date:  2017-08-08       Impact factor: 4.379

Review 6.  Current achievements and future directions in genetic engineering of European plum (Prunus domestica L.).

Authors:  Cesar Petri; Nuria Alburquerque; Mohamed Faize; Ralph Scorza; Chris Dardick
Journal:  Transgenic Res       Date:  2018-04-12       Impact factor: 2.788

7.  Variation in Mutation Spectra Among CRISPR/Cas9 Mutagenized Poplars.

Authors:  Estefania Elorriaga; Amy L Klocko; Cathleen Ma; Steven H Strauss
Journal:  Front Plant Sci       Date:  2018-05-07       Impact factor: 5.753

8.  Porcine reproductive and respiratory syndrome virus (PRRSV) inhibition with engineered Cas13d.

Authors:  Guo Li; Xinjie Wang; Yajing Liu; Xinyuan Lv; Guanglei Li; Chengcheng Zhao; Dandan Wang; Xingxu Huang; Xiaoxiang Hu
Journal:  J Genet Genomics       Date:  2020-03-17       Impact factor: 4.275

9.  Targeted deletion of floral development genes in Arabidopsis with CRISPR/Cas9 using the RNA endoribonuclease Csy4 processing system.

Authors:  Yingzhu Liu; Yike Gao; Yaohui Gao; Qixiang Zhang
Journal:  Hortic Res       Date:  2019-08-21       Impact factor: 6.793

10.  From Traditional Breeding to Genome Editing for Boosting Productivity of the Ancient Grain Tef [Eragrostis tef (Zucc.) Trotter].

Authors:  Muhammad Numan; Abdul Latif Khan; Sajjad Asaf; Mohammad Salehin; Getu Beyene; Zerihun Tadele; Ayalew Ligaba-Osena
Journal:  Plants (Basel)       Date:  2021-03-25
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