Literature DB >> 27012179

Enhancing aptamer function and stability via in vitro selection using modified nucleic acids.

Kirsten N Meek1, Alexandra E Rangel1, Jennifer M Heemstra2.   

Abstract

Nucleic acid aptamers have emerged as a promising alternative to antibodies for use as recognition elements in therapeutics, bioimaging, and analytical applications. A key benefit that aptamers possess relative to antibodies is their ability to be chemically synthesized. This advantage, coupled with the broad range of modified nucleotide building blocks that can be constructed using chemical synthesis, has enabled the discovery and development of modified aptamers having extraordinary affinity, specificity, and biostability. Early efforts to generate modified aptamers focused on selection of a native DNA or RNA aptamer, followed by post-selection trial-and-error testing of modifications. However, recent advances in polymerase engineering and templated nucleic acid synthesis have enabled the direct selection of aptamers having modified backbones and nucleobases. This review will discuss these technological advances and highlight the improvements in aptamer function that have been realized through in vitro selection of non-natural nucleic acids.
Copyright © 2016 Elsevier Inc. All rights reserved.

Keywords:  Affinity reagent; Aptamer; In vitro selection; Nucleic acid; Polymerase engineering; Templated synthesis

Mesh:

Substances:

Year:  2016        PMID: 27012179     DOI: 10.1016/j.ymeth.2016.03.008

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  20 in total

1.  Structure-activity relationships of the ATP cofactor in ligase-catalysed oligonucleotide polymerisations.

Authors:  Yi Lei; Ryan Hili
Journal:  Org Biomol Chem       Date:  2017-02-28       Impact factor: 3.876

Review 2.  Combating small molecule environmental contaminants: detection and sequestration using functional nucleic acids.

Authors:  Aimee A Sanford; Brea A Manuel; Misael A Romero-Reyes; Jennifer M Heemstra
Journal:  Chem Sci       Date:  2022-06-06       Impact factor: 9.969

3.  Efficiency and fidelity of T3 DNA ligase in ligase-catalysed oligonucleotide polymerisations.

Authors:  Yi Lei; Joshua Washington; Ryan Hili
Journal:  Org Biomol Chem       Date:  2019-02-13       Impact factor: 3.876

Review 4.  Aptamer and its applications in neurodegenerative diseases.

Authors:  Jing Qu; Shuqing Yu; Yuan Zheng; Yan Zheng; Hui Yang; Jianliang Zhang
Journal:  Cell Mol Life Sci       Date:  2016-08-25       Impact factor: 9.261

5.  A CTLA-4 Antagonizing DNA Aptamer with Antitumor Effect.

Authors:  Bo-Tsang Huang; Wei-Yun Lai; Yi-Chung Chang; Jen-Wei Wang; Shauh-Der Yeh; Emily Pei-Ying Lin; Pan-Chyr Yang
Journal:  Mol Ther Nucleic Acids       Date:  2017-08-15       Impact factor: 8.886

Review 6.  Key Aspects of Nucleic Acid Library Design for in Vitro Selection.

Authors:  Maria A Vorobyeva; Anna S Davydova; Pavel E Vorobjev; Alya G Venyaminova
Journal:  Int J Mol Sci       Date:  2018-02-05       Impact factor: 5.923

7.  Circular L-RNA aptamer promotes target recognition and controls gene activity.

Authors:  Danyang Ji; Kaixin Lyu; Haizhou Zhao; Chun Kit Kwok
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

Review 8.  Aptamer-based biosensors for the diagnosis of sepsis.

Authors:  Lubin Liu; Zeyu Han; Fei An; Xuening Gong; Chenguang Zhao; Weiping Zheng; Li Mei; Qihui Zhou
Journal:  J Nanobiotechnology       Date:  2021-07-19       Impact factor: 10.435

9.  Post-ExSELEX stabilization of an unnatural-base DNA aptamer targeting VEGF165 toward pharmaceutical applications.

Authors:  Michiko Kimoto; Mana Nakamura; Ichiro Hirao
Journal:  Nucleic Acids Res       Date:  2016-07-07       Impact factor: 16.971

Review 10.  Aptamer: A potential oligonucleotide nanomedicine in the diagnosis and treatment of hepatocellular carcinoma.

Authors:  Rusdina Bte Ladju; Devis Pascut; Muhammad Nasrum Massi; Claudio Tiribelli; Caecilia H C Sukowati
Journal:  Oncotarget       Date:  2017-12-16
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