Literature DB >> 27010333

UniProt Tools.

Sangya Pundir1, Maria J Martin1, Claire O'Donovan1.   

Abstract

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data (UniProt Consortium, 2015). The UniProt Web site receives ∼400,000 unique visitors per month and is the primary means to access UniProt. Along with various datasets that you can search, UniProt provides three main tools. These are the 'BLAST' tool for sequence similarity searching, the 'Align' tool for multiple sequence alignment, and the 'Retrieve/ID Mapping' tool for using a list of identifiers to retrieve UniProtKB proteins and to convert database identifiers from UniProt to external databases or vice versa. This unit provides three basic protocols, three alternate protocols, and two support protocols for using UniProt tools.
Copyright © 2016 John Wiley & Sons, Inc.

Entities:  

Keywords:  UniProt; navigation; search; tutorial

Mesh:

Year:  2016        PMID: 27010333      PMCID: PMC4941944          DOI: 10.1002/0471250953.bi0129s53

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN: 1934-3396


  4 in total

1.  Finding homologs in amino acid sequences using network BLAST searches.

Authors:  Istvan Ladunga
Journal:  Curr Protoc Bioinformatics       Date:  2009-03

2.  A comprehensive protein-centric ID mapping service for molecular data integration.

Authors:  Hongzhan Huang; Peter B McGarvey; Baris E Suzek; Raja Mazumder; Jian Zhang; Yongxing Chen; Cathy H Wu
Journal:  Bioinformatics       Date:  2011-04-15       Impact factor: 6.937

Review 3.  An overview of multiple sequence alignment.

Authors:  Victor Simossis; Jens Kleinjung; Jaap Heringa
Journal:  Curr Protoc Bioinformatics       Date:  2003-11

4.  UniProt: a hub for protein information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 16.971

  4 in total
  23 in total

1.  IRWNRLPI: Integrating Random Walk and Neighborhood Regularized Logistic Matrix Factorization for lncRNA-Protein Interaction Prediction.

Authors:  Qi Zhao; Yue Zhang; Huan Hu; Guofei Ren; Wen Zhang; Hongsheng Liu
Journal:  Front Genet       Date:  2018-07-04       Impact factor: 4.599

2.  Zinc and Copper Ions Induce Aggregation of Human β-Crystallins.

Authors:  Vanesa Ramirez-Bello; Javier Martinez-Seoane; Arline Fernández-Silva; Carlos Amero
Journal:  Molecules       Date:  2022-05-06       Impact factor: 4.927

3.  Characterization of Kinase Expression Related to Increased Migration of PC-3M Cells Using Global Comparative Phosphoproteome Analysis.

Authors:  Yan Gao; Yun-Sok Ha; Tae Gyun Kwon; Young-Chang Cho; Sangkyu Lee; Jun Nyung Lee
Journal:  Cancer Genomics Proteomics       Date:  2020 Sep-Oct       Impact factor: 4.069

4.  High-throughput metabolomic and transcriptomic analyses vet the potential route of cerpegin biosynthesis in two varieties of Ceropegia bulbosa Roxb.

Authors:  Sachin A Gharat; Balkrishna A Shinde; Ravindra D Mule; Sachin A Punekar; Bhushan B Dholakia; Ramesha H Jayaramaiah; Gopalakrishna Ramaswamy; Ashok P Giri
Journal:  Planta       Date:  2019-12-04       Impact factor: 4.116

5.  Diversity and Evolutionary Analysis of Iron-Containing (Type-III) Alcohol Dehydrogenases in Eukaryotes.

Authors:  Carlos Gaona-López; Adriana Julián-Sánchez; Héctor Riveros-Rosas
Journal:  PLoS One       Date:  2016-11-28       Impact factor: 3.240

6.  Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb.

Authors:  Antonio Palomba; Alessandro Tanca; Cristina Fraumene; Marcello Abbondio; Francesco Fancello; Alberto Stanislao Atzori; Sergio Uzzau
Journal:  Proteomes       Date:  2017-12-18

7.  Overexpression of the NMig1 Gene Encoding a NudC Domain Protein Enhances Root Growth and Abiotic Stress Tolerance in Arabidopsis thaliana.

Authors:  Valentin Velinov; Irina Vaseva; Grigor Zehirov; Miroslava Zhiponova; Mariana Georgieva; Nick Vangheluwe; Tom Beeckman; Valya Vassileva
Journal:  Front Plant Sci       Date:  2020-06-11       Impact factor: 5.753

8.  In vitro discovery of novel prokaryotic ion channel candidates for antiarrhythmic gene therapy.

Authors:  Tianyu Wu; Hung X Nguyen; Nenad Bursac
Journal:  Methods Enzymol       Date:  2021-04-09       Impact factor: 1.600

9.  Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents.

Authors:  Sandra Giuliani; Arthur C Silva; Joyce V V B Borba; Pablo I P Ramos; Ross A Paveley; Eugene N Muratov; Carolina Horta Andrade; Nicholas Furnham
Journal:  PLoS Comput Biol       Date:  2018-10-22       Impact factor: 4.475

10.  The Bipartite Network Projection-Recommended Algorithm for Predicting Long Non-coding RNA-Protein Interactions.

Authors:  Qi Zhao; Haifan Yu; Zhong Ming; Huan Hu; Guofei Ren; Hongsheng Liu
Journal:  Mol Ther Nucleic Acids       Date:  2018-09-29       Impact factor: 8.886

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