| Literature DB >> 27006531 |
Marcelo Ananias Teocchi1, Lília D'Souza-Li1.
Abstract
Seizure models have demonstrated that neuroinflammation and neurodegeneration are preponderant characteristics of epilepsy. Considering the lack of clinical studies, our aim is to investigate the extrinsic pathway of apoptosis in pharmacoresistant temporal lobe epilepsy (TLE) associated with hippocampal sclerosis (HS) patients, TLE(HS). By a specific death receptor-mediated apoptosis array plate, 31 upregulated targets were revealed in the sclerotic hippocampus from TLE(HS) patients. Amongst them are the encoding genes for ligands (FASLG, TNF, and TNFSF10) and death receptors (FAS, TNFRSF1A, TNFRSF10A, and TNFRSF10B). In addition, we evaluated the hippocampal relative mRNA expression of the two TNF receptors, TNFRSF1A and TNFRSF1B, in patients, being both upregulated (n = 14; P < 0.01 and P < 0.04, resp.) when compared to the post mortem control group (n = 4). Our results have clearly suggested that three different death receptor apoptotic systems may be associated with the maintenance and progression of TLE-associated HS: (1) TNF-TNFRSF1A, (2) FASLG-FAS, and (3) TNFSF10-TNFRSF10A/B. Their effects on epilepsy are still scarcely comprehended. Our study points out to TNF and TNF receptor superfamily pathways as important targets for pharmacological studies regarding the benefits of an anti-inflammatory therapy in these patients.Entities:
Mesh:
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Year: 2016 PMID: 27006531 PMCID: PMC4781997 DOI: 10.1155/2016/8290562
Source DB: PubMed Journal: Mediators Inflamm ISSN: 0962-9351 Impact factor: 4.711
Array target genes: apoptosis through death receptors in TLE(HS).
| Target genes | |||
|---|---|---|---|
| Symbol, approved name, and Assay ID | Synonyms and aliases | Function | RQ |
| ACTA1 | NEM3, “nemaline myopathy type 3” | Cell motility | 1.12 |
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| ACTB | Cell motility | 1.74 | |
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| APAF1 | APAF-1, CED4 | Apoptosis induction by CASP3 activation | 1.59 |
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| BAX | BCL2L4 | Apoptosis induction by CASP3 activation | 1.50 |
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| BCL2 | Bcl-2, PPP1R50, “protein phosphatase 1, and regulatory subunit 50” | Apoptosis inhibition | 1.87 |
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| BID | Apoptosis induction | 1.40 | |
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| BIRC2 | “Apoptosis inhibitor 1”, c-IAP1, cIAP1, hiap-2, MIHB, “NFR2-TRAF signalling complex protein”, and RNF48 | Apoptosis inhibition | 1.31 |
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| BIRC3 | “Apoptosis inhibitor 2”, c-IAP2, cIAP2, hiap-1, “inhibitor of apoptosis protein 1”, MALT2, “mammalian IAP homolog C”, MIHC, RNF49, and “TNFR2-TRAF signaling complex protein” | Apoptosis inhibition | 1.27 |
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| CASP2 | ICH1, MGC2181, PPP1R57, and “protein phosphatase 1, regulatory subunit 57” | Involved in the activation cascade of caspases responsible for apoptosis execution | 1.38 |
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| CASP3 | Apopain, CPP32, CPP32B, and Yama | Involved in the activation cascade of caspases responsible for apoptosis execution | 1.44 |
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| CASP7 | CMH-1, ICE-LAP3, and MCH3 | Involved in the activation cascade of caspases responsible for apoptosis execution; overexpression promotes programmed cell death | 2.13 |
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| CASP8 | Casp-8, FLICE, MACH, and MCH5 | Most upstream protease of the activation cascade of caspases responsible for the FAS mediated and TNFRSF1A induced cell death | 2.45 |
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| CASP9 | APAF-3, ICE-LAP6, MCH6, PPP1R56, and “protein phosphatase 1, regulatory subunit 56” | Involved in the activation cascade of caspases responsible for apoptosis execution | 1.55 |
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| CFLAR | c-FLIP, CASH, Casper, CLARP, FLAME, FLIP, I-FLICE, and MRIT | Apoptosis regulator protein as FAS mediated apoptosis inhibitor | 1.59 |
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| CHUK | IKBKA, IKK-alpha, IKK1, IKKA, and NFKBIKA | Serine kinase. Essential role in the NFkB signaling pathway | 1.22 |
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| DAXX | DAP6 | JNK pathway and apoptosis mediator via MAP3K5 [FAS and TGFBR2 (transforming growth factor beta receptor II) signaling] | 1.53 |
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| DIABLO | DFNA64, DIABLO-S, FLJ10537, FLJ25049, “second mitochondria-derived activator of caspase”, and SMAC | Apoptosis promoter by caspase activation in the cytochrome c/APAF1/CASP9 pathway | 1.45 |
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| FADD | “Fas-associating death domain-containing protein,” “Fas-associating protein with death domain,” GIG3, “growth-inhibiting gene 3 protein,” “mediator of receptor-induced toxicity,” and MORT1 | CASP8 and CASP10 apoptotic adaptor recruiter to activated FAS and TNFRSF1A | 1.13 |
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| FAS | APO-1, CD95, and “TNF receptor superfamily member 6” | Receptor with death domain for FASLG | 1.65 |
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| FASLG | CD178, FasL | Cytokine ligand for FAS | 5.46 |
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| IKBKB | IKK-beta, IKK2, IKKB, and NFKBIKB | NFkB activator | 1.96 |
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| IKBKG | FIP-3, FIP3, Fip3p, IKK-gamma, NEMO, and ZC2HC9 | NFkB activator | 1.65 |
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| MAP3K5 | “Apoptosis signal regulating kinase 1,” ASK1, and MAPKKK5 | Signal transduction mediator by oxidative stress and receptor-mediated inflammatory signals (TNF) | 1.55 |
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| MAPK8 | JNK, JNK1, “JUN N-terminal kinase,” and SAPK1 | Stressed cell apoptosis promoter through TP53 and YAP1 | 1.05 |
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| MAPK9 | JNK2, “Jun kinase,” p54a, and SAPK | Stressed cell apoptosis promoter through TP53 and YAP1 | 0.86 |
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| NFKB1 | KBF1, NF-kappaB, NF-kB1, NFkappaB, NFKB-p50, p105, and p50 | Rel protein-specific transcription inhibitor (105 kD) and DNA binding subunit of the transcription factor NFkB (50 kD) | 1.50 |
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| NFKB2 | LYT-10, NF-kB2, p105, and p52 | Subunit of the transcription factor NFkB | 3.21 |
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| NFKBIA | IkappaBalpha, IKBA, and MAD-3 | NFkB inhibitor | 2.36 |
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| NGF | Ligand for NTRK1 and NGFR; neuronal proliferation, differentiation and survival regulator | 0.90 | |
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| NGFR | CD271, “low affinity nerve growth factor receptor,” p75NTR, “TNFR superfamily, member 16,” and TNFRSF16 | Neural cell death or survival mediator | 3.53 |
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| PARP1 | PARP | DNA repair pathway initiation; apoptosis promoter in response to genotoxic stress | 1.51 |
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| RELA | p65 | Subunit of the transcription factor NFkB | 2.02 |
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| TNF | DIF, “TNF superfamily, member 2,” TNF-alpha, and TNFSF2 | Multifunctional proinflammatory cytokine ligand for TNFRSF1A and TNFRSF1B | 39.96 |
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| TNFRSF10A | Apo2, CD261, DR4, and TRAILR-1 | Receptor with death domain for TNFSF10; NFkB activator | 2.39 |
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| TNFRSF10B | CD262, DR5, KILLER, TRAIL-R2, TRICK2A, and TRICKB | Receptor with death domain for TNFSF10; ER stress-induced apoptosis promoter; NFkB activator | 1.55 |
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| TNFRSF10C | CD263, DcR1, LIT, TRAILR3, and TRID | Decoy receptor for TNFSF10; apoptosis inhibitor | 4.82 |
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| TNFRSF10D | CD264, DcR2, TRAILR4, and TRUNDD | Decoy receptor for TNFSF10; apoptosis inhibitor | 3.74 |
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| TNFRSF1A | CD120a, TNF-R, TNF-R-I, TNF-R55, TNFAR, and TNFR60 | Receptor with death domain for TNF and LTA (lymphotoxin alpha); NFkB activator, apoptosis mediator, and inflammation regulator | 3.07 |
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| TNFRSF21 | CD358, “death receptor 6,” and DR6 | Receptor with death domain; apoptosis promoter | 1.09 |
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| TNFRSF25 | APO-3, DDR3, DR3, LARD, TR3, TRAMP, WSL-1, and WSL-LR | Receptor with death domain for TNFSF12; mediator of NFkB activation and apoptosis promoter | 1.72 |
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| TNFRSF6B | DcR3, DCR3, M68, and TR6 | Decoy receptor for FASLG; apoptosis inhibitor | 2.54 |
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| TNFSF10 | Apo-2L, CD253, TL2, and TRAIL | Cytokine ligand for TNFRSF10A, TNFRSF10B, TNFRSF10C, and TNFRSF10D | 2.50 |
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| TP53 | LFS1, “Li-Fraumeni syndrome,” and p53 | Tumor suppressor, growth arrest, or apoptosis promoter depending on the physiological circumstances and cell type | 2.77 |
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| TRAF2 | TRAP3 | Mediator of the antiapoptotic signals from TNF receptors; NFkB and JNK activation regulator | 1.54 |
List of all target genes investigated in the array, involved in the extrinsic apoptotic pathway. The gene expression data [relative quantification (RQ) column], also shown in Figure 1, corresponds to the cDNA pooled from TLE(HS) patients (n = 12) versus the cDNA pooled from post mortem controls (n = 4). The latter was used as a calibrator with gene expression equal to 1.0. The values in the table can be converted to fold change values, where the negative inverse (−1/x) is taken for values between 0 and 1 (e.g., 0.5 is converted to −2). Values greater than 1 will not be affected. A −2 value indicates that the molecule is 2-fold downregulated. Only MAPK9 and NGF were downregulated. The reference gene candidates in the plate were 18S (eukaryotic 18S rRNA; Hs99999901_s1), GAPDH (glyceraldehyde-3-phosphate dehydrogenase; Hs99999905_m1), GUSB (glucuronidase, beta; Hs99999909_m1), and HPRT1 (hypoxanthine phosphoribosyltransferase 1; Hs99999908_m1) although only GAPDH and HPRT1 were effectively used as reference genes (in combination).
Figure 1Hippocampal expression of genes associated with apoptosis through death receptors in TLE(HS) patients versus post mortem controls. The combination of GAPDH and HPRT1 was used as the reference gene. The pool of post mortem control samples (n = 4) was the reference sample (calibrator) and its relative quantification (RQ) was always 1.0. Different colors represent gene expression in RQ values (or fold-change values, when RQ is a positive number) and correspond to the following parameters: red = very upregulated (RQ ≥ 2.0); orange = upregulated (1.99 ≥ RQ ≥ 1.5); gray = normal (1.49 ≥ RQ ≥ 0.67). None of the 44 target genes analyzed was downregulated (0.66 ≥ RQ ≥ 0.51) or very downregulated (RQ ≤ 0.5).
Figure 2Hippocampal gene expression of TNFRSF1A and TNFRSF1B in TLE(HS) patients versus post mortem controls. HPRT1 and ENO2/TBP were used as reference genes. One of the post mortem control samples was randomly chosen as the reference and its relative quantification was always 1.0. All quantification data for the remaining samples, including controls and patients, was benchmarked to the reference sample. Samples were separated in two groups: TLE(HS) patients (n = 14) and post mortem controls (n = 4). (a) Columns are means with SD. Mann-Whitney U tests were used for the comparison between groups. P < 0.05; P < 0.01. (b) Marks are different geometric figures, which represent the gene expression mean of the samples. The horizontal line is the mean of the group analyzed. Circles and squares correspond to gene expression with HPRT1 as the reference. The two kinds of triangles correspond to gene expression with ENO2/TBP as the reference. The red and green squares (outliers) correspond to TLE 09 and TLE 03 patients, respectively (see Table 1 in Teocchi et al., 2013 [8]).
Figure 3Apoptosis through death receptors: a signaling pathway in TLE(HS). This pathway was generated by the IPA software, based on 10 of the 15 upregulated genes (cutoff 2.0-fold change; see Table 1) in hippocampal tissues from TLE(HS) patients (n = 12) compared to post mortem controls (n = 4). The biological relationship between two genes, represented as nodes, is shown as a line. Nodes with different shapes indicate different functional class. The pathway created did not include the following genes: NFKB2, NGFR, TNFSF10, TNFRSF10C, and TNFSF10D. The function “nervous relaxed” was used. A, activation; E, expression regulation; I, inhibition; L, proteolysis; LO, localization; M, biochemical modification; P, phosphorylation; PD, protein-DNA interaction; PP, protein-protein interaction; RB, regulation of binding; T, transcription; and TR, translocation.