Literature DB >> 27001821

Advanced Molecular Detection of Malarone Resistance.

Eldin Talundzic1, Mateusz M Plucinski2, Shweta Biliya3, Luciana M Silva-Flannery4, Paul M Arguin5, Eric S Halsey2, John W Barnwell5, Fredrik Vannberg3, Venkatachalam Udhayakumar5.   

Abstract

The rapid emergence of drug-resistant malaria parasites during the course of an infection remains a major challenge for providing accurate treatment guidelines. This is particularly important in cases of malaria treatment failure. Using a previously well-characterized case of malaria treatment failure, we show the utility of using next-generation sequencing for early detection of the rise and selection of a previously reported atovaquone-proguanil (malarone) drug resistance-associated mutation.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

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Year:  2016        PMID： 27001821      PMCID： PMC4879379          DOI： 10.1128/AAC.00171-16

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN： 0066-4804            Impact factor:   5.191


  16 in total

1.  Genetic confirmation of atovaquone-proguanil-resistant Plasmodium falciparum malaria acquired by a nonimmune traveler to East Africa.

Authors:  Eli Schwartz; Shay Bujanover; Kevin C Kain
Journal:  Clin Infect Dis       Date:  2003-07-18       Impact factor: 9.079

2.  Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications.

Authors:  Athanasios C Tsiatis; Alexis Norris-Kirby; Roy G Rich; Michael J Hafez; Christopher D Gocke; James R Eshleman; Kathleen M Murphy
Journal:  J Mol Diagn       Date:  2010-04-29       Impact factor: 5.568

3.  Pyrosequencing, a high-throughput method for detecting single nucleotide polymorphisms in the dihydrofolate reductase and dihydropteroate synthetase genes of Plasmodium falciparum.

Authors:  Zhiyong Zhou; Amanda C Poe; Josef Limor; Katharine K Grady; Ira Goldman; Andrea M McCollum; Ananias A Escalante; John W Barnwell; Venkatachalam Udhayakumar
Journal:  J Clin Microbiol       Date:  2006-09-06       Impact factor: 5.948

4.  Rapid real-time PCR genotyping of mutations associated with sulfadoxine-pyrimethamine resistance in Plasmodium falciparum.

Authors:  Alisa P Alker; Victor Mwapasa; Steven R Meshnick
Journal:  Antimicrob Agents Chemother       Date:  2004-08       Impact factor: 5.191

5.  Parallel evolution of adaptive mutations in Plasmodium falciparum mitochondrial DNA during atovaquone-proguanil treatment.

Authors:  Lise Musset; Jacques Le Bras; Jérôme Clain
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

Review 6.  Routine use of microbial whole genome sequencing in diagnostic and public health microbiology.

Authors:  Claudio U Köser; Matthew J Ellington; Edward J P Cartwright; Stephen H Gillespie; Nicholas M Brown; Mark Farrington; Matthew T G Holden; Gordon Dougan; Stephen D Bentley; Julian Parkhill; Sharon J Peacock
Journal:  PLoS Pathog       Date:  2012-08-02       Impact factor: 6.823

7.  Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems.

Authors:  André E Minoche; Juliane C Dohm; Heinz Himmelbauer
Journal:  Genome Biol       Date:  2011-11-08       Impact factor: 13.583

8.  Novel Mutation in Cytochrome B of Plasmodium falciparum in One of Two Atovaquone-Proguanil Treatment Failures in Travelers Returning From Same Site in Nigeria.

Authors:  Mateusz M Plucinski; Curtis S Huber; Sheila Akinyi; Willard Dalton; Mary Eschete; Katharine Grady; Luciana Silva-Flannery; Blaine A Mathison; Venkatachalam Udhayakumar; Paul M Arguin; John W Barnwell
Journal:  Open Forum Infect Dis       Date:  2014-08-05       Impact factor: 3.835

9.  A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.

Authors:  Rosalinda D'Amore; Umer Zeeshan Ijaz; Melanie Schirmer; John G Kenny; Richard Gregory; Alistair C Darby; Migun Shakya; Mircea Podar; Christopher Quince; Neil Hall
Journal:  BMC Genomics       Date:  2016-01-14       Impact factor: 3.969

10.  How next-generation sequencing and multiscale data analysis will transform infectious disease management.

Authors:  Theodore R Pak; Andrew Kasarskis
Journal:  Clin Infect Dis       Date:  2015-08-06       Impact factor: 9.079
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  7 in total

1.  Selection of Cytochrome b Mutants Is Rare among Plasmodium falciparum Patients Failing Treatment with Atovaquone-Proguanil in Cambodia.

Authors:  Jessica T Lin; Andreea Waltmann; Kara A Moser; Zackary Park; Yu Bin Na; Ozkan Aydemir; Nicholas F Brazeau; Panita Gosi; Patrick W Marsh; Meredith S Muller; Michele Spring; Somethy Sok; Jeffrey A Bailey; David L Saunders; Chanthap Lon; Mariusz Wojnarski
Journal:  Antimicrob Agents Chemother       Date:  2021-02-17       Impact factor: 5.191

2.  Molecular Epidemiology of Plasmodium falciparum kelch13 Mutations in Senegal Determined by Using Targeted Amplicon Deep Sequencing.

Authors:  Eldin Talundzic; Yaye D Ndiaye; Awa B Deme; Christian Olsen; Dhruviben S Patel; Shweta Biliya; Rachel Daniels; Fredrik O Vannberg; Sarah K Volkman; Venkatachalam Udhayakumar; Daouda Ndiaye
Journal:  Antimicrob Agents Chemother       Date:  2017-02-23       Impact factor: 5.191

3.  Next-Generation Sequencing and Bioinformatics Protocol for Malaria Drug Resistance Marker Surveillance.

Authors:  Eldin Talundzic; Shashidhar Ravishankar; Julia Kelley; Dhruviben Patel; Mateusz Plucinski; Sarah Schmedes; Dragan Ljolje; Brooke Clemons; Susan Madison-Antenucci; Paul M Arguin; Naomi W Lucchi; Fredrik Vannberg; Venkatachalam Udhayakumar
Journal:  Antimicrob Agents Chemother       Date:  2018-03-27       Impact factor: 5.191

4.  Emergence and Spread of kelch13 Mutations Associated with Artemisinin Resistance in Plasmodium falciparum Parasites in 12 Thai Provinces from 2007 to 2016.

Authors:  Theerayot Kobasa; Eldin Talundzic; Rungniran Sug-Aram; Patcharida Boondat; Ira F Goldman; Naomi W Lucchi; Pratin Dharmarak; David Sintasath; Mark Fukuda; Toni Whistler; John MacArthur; Venkatachalam Udhayakumar; Preecha Prempree; Nipon Chinanonwait
Journal:  Antimicrob Agents Chemother       Date:  2018-03-27       Impact factor: 5.191

5.  Comparative analysis of targeted next-generation sequencing for Plasmodium falciparum drug resistance markers.

Authors:  Chanon Kunasol; Arjen M Dondorp; Elizabeth M Batty; Vorthunju Nakhonsri; Puritat Sinjanakhom; Nicholas P J Day; Mallika Imwong
Journal:  Sci Rep       Date:  2022-04-01       Impact factor: 4.379

6.  Atovaquone-Proguanil in Combination With Artesunate to Treat Multidrug-Resistant P. falciparum Malaria in Cambodia: An Open-Label Randomized Trial.

Authors:  Mariusz Wojnarski; Chanthap Lon; Pattaraporn Vanachayangkul; Panita Gosi; Somethy Sok; Agus Rachmat; Dustin Harrison; Catherine M Berjohn; Michele Spring; Suwanna Chaoratanakawee; Mali Ittiverakul; Nillawan Buathong; Soklyda Chann; Saowaluk Wongarunkochakorn; Andreea Waltmann; Worachet Kuntawunginn; Mark M Fukuda; Hana Burkly; Vireak Heang; Thay Keang Heng; Nareth Kong; Threechada Boonchan; Bolin Chum; Philip Smith; Andrew Vaughn; Satharath Prom; Jessica Lin; Dysoley Lek; David Saunders
Journal:  Open Forum Infect Dis       Date:  2019-09-04       Impact factor: 3.835

Review 7.  Machine learning and applications in microbiology.

Authors:  Stephen J Goodswen; Joel L N Barratt; Paul J Kennedy; Alexa Kaufer; Larissa Calarco; John T Ellis
Journal:  FEMS Microbiol Rev       Date:  2021-09-08       Impact factor: 16.408
  7 in total

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