Literature DB >> 26998568

Retrospective diagnosis of two rabies cases in humans by high throughput sequencing.

V G Dedkov1, A N Lukashev2, A A Deviatkin3, K V Kuleshov4, M V Safonova5, E M Poleshchuk6, J F Drexler7, G A Shipulin4.   

Abstract

BACKGROUND: Rabies is prevalent in 150 countries and is definitely found in Russian Federation. The average registered incidence of rabies infection among animals in Russia is 3000 cases per year. At least 500,000 cases of animal bites and scratches are registered in the Russia every year, but only 2-4 cases of rabies infection in humans are reported per year. This relatively low incidence of rabies infection among humans is the result of a well-organized program of rabies surveillance and control as well as the readily available vaccination and immunoglobulin therapies. However, physician awareness of rabies infection in patients with acute encephalopathy is low, and some cases of rabies remain undiagnosed.
OBJECTIVES: A retrospective study of autopsy materials from patients who died of encephalitis of unknown etiology in the Astrakhan region of Russia in 2003. STUDY
DESIGN: A broad-range polymerase chain reaction (PCR) analysis followed by high throughput sequencing were used for the diagnosis.
RESULTS: Two cases of rabies were detected and subsequently confirmed using a fluorescent antibody test, an enzyme-linked immunosorbent assay (ELISA) and a mouse inoculation test. Two strains of rabies virus were isolated and characterized using virological methods. The entire genome of each strain was sequenced.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Broad-range PCR; High throughput sequencing; Rabies virus; Russia

Mesh:

Year:  2016        PMID: 26998568     DOI: 10.1016/j.jcv.2016.03.012

Source DB:  PubMed          Journal:  J Clin Virol        ISSN: 1386-6532            Impact factor:   3.168


  3 in total

1.  The Study of Viral RNA Diversity in Bird Samples Using De Novo Designed Multiplex Genus-Specific Primer Panels.

Authors:  Andrey A Ayginin; Ekaterina V Pimkina; Alina D Matsvay; Anna S Speranskaya; Marina V Safonova; Ekaterina A Blinova; Ilya V Artyushin; Vladimir G Dedkov; German A Shipulin; Kamil Khafizov
Journal:  Adv Virol       Date:  2018-08-12

2.  Evaluation of Direct Metagenomics and Target Enriched Approaches for High-throughput Sequencing of Field Rabies Viruses.

Authors:  Anna Orłowska; Ewelina Iwan; Marcin Smreczak; Jerzy Rola
Journal:  J Vet Res       Date:  2019-11-16       Impact factor: 1.744

3.  Enrichment of Viral Nucleic Acids by Solution Hybrid Selection with Genus Specific Oligonucleotides.

Authors:  Andrei A Deviatkin; Alexander N Lukashev; Mikhail M Markelov; Larisa V Gmyl; German A Shipulin
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

  3 in total

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