Literature DB >> 26997592

Structure and Associated Biological Functions of Viroids.

Gerhard Steger1, Jean-Pierre Perreault2.   

Abstract

Mature viroids consist of a noncoding, covalently closed circular RNA that is able to autonomously infect respective host plants. Thus, they must utilize proteins of the host for most biological functions such as replication, processing, transport, and pathogenesis. Therefore, viroids can be regarded as minimal parasites of the host machinery. They have to present to the host machinery the appropriate signals based on either their sequence or their structure. Here, we summarize such sequence and structural features critical for the biological functions of viroids.
© 2016 Elsevier Inc. All rights reserved.

Keywords:  Avsunviroidae; Biological function; Biophysical properties; Consensus structures; Pospiviroidae; SHAPE; Structure motifs; hSHAPE

Mesh:

Substances:

Year:  2016        PMID: 26997592     DOI: 10.1016/bs.aivir.2015.11.002

Source DB:  PubMed          Journal:  Adv Virus Res        ISSN: 0065-3527            Impact factor:   9.937


  18 in total

1.  Dissecting the secondary structure of the circular RNA of a nuclear viroid in vivo: A "naked" rod-like conformation similar but not identical to that observed in vitro.

Authors:  Amparo López-Carrasco; Ricardo Flores
Journal:  RNA Biol       Date:  2016-08-30       Impact factor: 4.652

2.  Predicting the Structure of a Viroid : Structure, Structure Distribution, Consensus Structure, and Structure Drawing.

Authors:  Gerhard Steger
Journal:  Methods Mol Biol       Date:  2022

3.  An Anthropocentric View of the Virosphere-Host Relationship.

Authors:  Rodrigo A L Rodrigues; Ana C Dos S P Andrade; Paulo V de M Boratto; Giliane de S Trindade; Erna G Kroon; Jônatas S Abrahão
Journal:  Front Microbiol       Date:  2017-08-30       Impact factor: 5.640

4.  Mutational Analysis of Eggplant Latent Viroid RNA Circularization by the Eggplant tRNA Ligase in Escherichia coli.

Authors:  Teresa Cordero; Beltrán Ortolá; José-Antonio Daròs
Journal:  Front Microbiol       Date:  2018-04-05       Impact factor: 5.640

5.  Different rates of spontaneous mutation of chloroplastic and nuclear viroids as determined by high-fidelity ultra-deep sequencing.

Authors:  Amparo López-Carrasco; Cristina Ballesteros; Vicente Sentandreu; Sonia Delgado; Selma Gago-Zachert; Ricardo Flores; Rafael Sanjuán
Journal:  PLoS Pathog       Date:  2017-09-14       Impact factor: 6.823

6.  Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo.

Authors:  Pablo Catalán; Santiago F Elena; José A Cuesta; Susanna Manrubia
Journal:  Viruses       Date:  2019-05-09       Impact factor: 5.048

7.  Direct visualization of the native structure of viroid RNAs at single-molecule resolution by atomic force microscopy.

Authors:  M Moreno; L Vázquez; A López-Carrasco; J A Martín-Gago; R Flores; C Briones
Journal:  RNA Biol       Date:  2019-02-08       Impact factor: 4.652

8.  Surveys in the Chrysanthemum Production Areas of Brazil and Colombia Reveal That Weeds Are Potential Reservoirs of Chrysanthemum Stunt Viroid.

Authors:  Danielle Gobatto; Lucas Araújo de Oliveira; Daniel Andrade de Siqueira Franco; Nubia Velásquez; José-Antonio Daròs; Marcelo Eiras
Journal:  Viruses       Date:  2019-04-17       Impact factor: 5.048

9.  Hop stunt viroid: A polyphagous pathogenic RNA that has shed light on viroid-host interactions.

Authors:  Joan Marquez-Molins; Gustavo Gomez; Vicente Pallas
Journal:  Mol Plant Pathol       Date:  2020-12-10       Impact factor: 5.663

Review 10.  Viroid research and its significance for RNA technology and basic biochemistry.

Authors:  Gerhard Steger; Detlev Riesner
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

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